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cleaning section done, with supporting files
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docs/guis/chroma/gui.md

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@@ -90,6 +90,41 @@ Clicking on any of the variables will plot the associated data just below.
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### Cleaning Extracted Data
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Move on to the `Cleaning` tab.
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- Potentially change the start and end times depending on when the modulation happens in your extracted data via `Refine Start` and `Refine End` entries.
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!!! warning "Expected Times"
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Please note that the `Refine Start` and `Refine End` entries refer to times in the Dataframes themselves, and it is possible that there are timezone issues from the extracted data times.
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One can check the times on the plotted data itself.
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- Click the `Create Plateaus` button. This will extract the correct tune values from dp/p and create steps that can be analyzed. These will then be displayed, for the selected beam, both the RF frequency and the raw tune data.
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<figure>
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<center>
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<img src="../../assets/images/chroma_gui/cleaning_tab_raw_data.png" width="85%" alt="Cleaning tab with raw tune data" />
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<figcaption> Cleaning Tab with Plot of RF Frequency and Raw Tune Data </figcaption>
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</center>
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</figure>
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- Click `Clean Data` in the top part of the window. This will compute the tune average for each step and remove outliers. The windows for each tune can be specified and outliers removed in `Bad Tune Lines` in the top part. The minimum plateau length is used to remove very short steps.
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In the plotting part of the window, move on to the `Cleaned Data` tab next to the `Raw Data` one.
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This will display the clean tune data, with its error bar for each step.
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Ideally this error bar should not be too visible.
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Note that some steps may be entirely cleaned out due to the cleaning settings.
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<figure>
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<center>
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<img src="../../assets/images/chroma_gui/cleaning_tab_cleaned_data.png" width="85%" alt="Cleaning tab with cleaned tune data" />
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<figcaption> Cleaning Tab with Plot of RF Frequency and Cleaned Tune Data </figcaption>
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</center>
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</figure>
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### Computing Chromaticity
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### Determining Corrections
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[timber_web]: https://timber.cern.ch/
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*[EIC]: Engineer in Charge, operators of the LHC

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