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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

[0.14.2] - 2025-03-06

Bug Fixes

  • Handle missing flowjax correctly (Adrian Seyboldt)

Testing

  • Mark tests as pymc or stan and select in ci (Adrian Seyboldt)

Ci

  • Use native arm github action runner (Adrian Seyboldt)

[0.14.1] - 2025-03-05

Ci

  • Update run-on-arch to avoid segfault (Adrian Seyboldt)

  • Repare 0.14.1 (Adrian Seyboldt)

[0.14.0] - 2025-03-05

Bug Fixes

  • Set 'make_initial_point_fn' in 'from_pyfunc' to None by default (#175) (Tomás Capretto)

Documentation

  • Add nutpie website source (Adrian Seyboldt)

  • Include frozen cell output in docs (Adrian Seyboldt)

Features

  • Add normalizing flow adaptation (Adrian Seyboldt)

Miscellaneous Tasks

  • Bump actions/attest-build-provenance from 1 to 2 (dependabot[bot])

  • Bump softprops/action-gh-release from 1 to 2 (dependabot[bot])

  • Bump uraimo/run-on-arch-action from 2 to 3 (dependabot[bot])

  • Update pre-commit config (Adrian Seyboldt)

Ci

  • Run python 3.13 in ci (Adrian Seyboldt)

  • Skip slow test on ci if emulating architecture (Adrian Seyboldt)

[0.13.4] - 2025-02-18

Bug Fixes

  • Add lock for pymc init point func (Adrian Seyboldt)

Ci

  • Make sure all python versions are available in the builds (Adrian Seyboldt)

  • Skip python 3.13 for now (Adrian Seyboldt)

[0.13.3] - 2025-02-12

Bug Fixes

  • Use arrow list with i64 offsets to store trace (Adrian Seyboldt)

  • Use i64 offsets in numba backend (Adrian Seyboldt)

  • Avoid numpy compatibility warning (Adrian Seyboldt)

  • Specify that we currently don't support py313 due to pyo3 (Adrian Seyboldt)

Features

  • Add support for pymc sampler initialization (jessegrabowski)

  • Use support_point as default init for pymc (Adrian Seyboldt)

  • Add option not to store some deterministics (Adrian Seyboldt)

  • Add option to freeze pymc models (Adrian Seyboldt)

Miscellaneous Tasks

  • Bump uraimo/run-on-arch-action from 2.7.2 to 2.8.1 (dependabot[bot])

  • Specify version as dynamic in pyproject (Adrian Seyboldt)

  • Update bridgestan (Adrian Seyboldt)

  • Update pre-commit versions (Adrian Seyboldt)

Styling

  • Reformat some code (Adrian Seyboldt)

Build

  • Bump some dependency versions (Adrian Seyboldt)

Ci

  • Use ubuntu_latest on aarch64 (Adrian Seyboldt)

  • Update CI script using maturin (Adrian Seyboldt)

[0.13.2] - 2024-07-26

Features

  • Support float32 settings in pytensor (Adrian Seyboldt)

Miscellaneous Tasks

  • Update dependencies (Adrian Seyboldt)

[0.13.1] - 2024-07-09

Bug Fixes

  • Fix jax backend with non-identifier variable names (Adrian Seyboldt)

Miscellaneous Tasks

  • Update dependencies (Adrian Seyboldt)

[0.13.0] - 2024-07-05

Documentation

  • Document low-rank mass matrix parameters (Adrian Seyboldt)

Features

  • Add low rank modified mass matrix adaptation (Adrian Seyboldt)

Miscellaneous Tasks

  • Remove releases from changelog (Adrian Seyboldt)

[0.12.0] - 2024-06-29

Features

  • Add pyfunc backend (Adrian Seyboldt)

  • Add python code for pyfunc backend (Adrian Seyboldt)

  • Add gradient_backend argument for pymc models (Adrian Seyboldt)

Miscellaneous Tasks

  • Bump version number (Adrian Seyboldt)

Styling

  • Fix pre-commit issues (Adrian Seyboldt)

Testing

  • Add tests for jax backend (Adrian Seyboldt)

Build

  • Add jax as optional dependency (Adrian Seyboldt)

[0.11.1] - 2024-06-16

Bug Fixes

  • Fix random variables with missing values in pymc deterministics (Adrian Seyboldt)

Features

  • Add progress bar on terminal (Adrian Seyboldt)

[0.11.0] - 2024-05-29

Bug Fixes

  • Use clone_replace instead of graph_replace (Adrian Seyboldt)

  • Allow shared vars to differ in expand and logp (Adrian Seyboldt)

Features

  • Add option to use draw base mass matrix estimate (Adrian Seyboldt)

  • Report detailed progress (Adrian Seyboldt)

  • Show the number of draws in progress overview (Adrian Seyboldt)

Miscellaneous Tasks

  • Bump KyleMayes/install-llvm-action from 1 to 2 (dependabot[bot])

  • Bump uraimo/run-on-arch-action from 2.7.1 to 2.7.2 (dependabot[bot])

  • Update dependencies (Adrian Seyboldt)

  • Update python dependencies (Adrian Seyboldt)

Refactor

  • Move threaded sampling to nuts-rs (Adrian Seyboldt)

  • Specify callback rate (Adrian Seyboldt)

  • Switch to arrow-rs (Adrian Seyboldt)

Styling

  • Fix formatting and clippy (Adrian Seyboldt)

Testing

  • Fix incorrect error type in test (Adrian Seyboldt)

Ci

  • Fix uploads of releases (Adrian Seyboldt)

  • Fix architectures in CI (Adrian Seyboldt)

[0.10.0] - 2024-03-20

Documentation

  • Mention non-blocking sampling in readme (Adrian Seyboldt)

Features

  • Allow sampling in the backgound (Adrian Seyboldt)

  • Implement check if background sampling is complete (Adrian Seyboldt)

  • Implement pausing and unpausing of samplers (Adrian Seyboldt)

  • Filter warnings and compile through pymc (Adrian Seyboldt)

Miscellaneous Tasks

  • Bump actions/setup-python from 4 to 5 (dependabot[bot])

  • Bump uraimo/run-on-arch-action from 2.5.0 to 2.7.1 (dependabot[bot])

  • Bump actions/checkout from 3 to 4 (dependabot[bot])

  • Bump actions/upload-artifact from 3 to 4 (dependabot[bot])

  • Bump the cargo group across 1 directory with 2 updates (dependabot[bot])

  • Some major version bumps in rust deps (Adrian Seyboldt)

  • Bump dependency versions (Adrian Seyboldt)

  • Bump version (Adrian Seyboldt)

  • Update changelog (Adrian Seyboldt)

Performance

  • Set the number of parallel chains dynamically (Adrian Seyboldt)

[0.9.2] - 2024-02-19

Bug Fixes

  • Allow dims with only length specified (Adrian Seyboldt)

Documentation

  • Update suggested mamba commands in README (#70) (Ben Mares)

  • Fix README typo bridgestan→nutpie (#69) (Ben Mares)

Features

  • Handle missing libraries more robustly (#72) (Ben Mares)

Miscellaneous Tasks

  • Bump actions/download-artifact from 3 to 4 (dependabot[bot])

Ci

  • Make sure the local nutpie is installed (Adrian Seyboldt)

  • Install local nutpie package in all jobs (Adrian Seyboldt)

[0.9.0] - 2023-09-12

Bug Fixes

  • Better error context for init point errors (Adrian Seyboldt)

Features

  • Improve error message by providing context (Adrian Seyboldt)

  • Use standard normal to initialize chains (Adrian Seyboldt)

Miscellaneous Tasks

  • Update deps (Adrian Seyboldt)

  • Rename stan model transpose function (Adrian Seyboldt)

  • Update nutpie (Adrian Seyboldt)

Styling

  • Fix formatting (Adrian Seyboldt)

[0.8.0] - 2023-08-18

Bug Fixes

  • Initialize points in uniform(-2, 2) (Adrian Seyboldt)

  • Multidimensional stan variables were stored in incorrect order (Adrian Seyboldt)

  • Fix with_coords for stan models (Adrian Seyboldt)

Miscellaneous Tasks

  • Update deps (Adrian Seyboldt)

  • Update deps (Adrian Seyboldt)

  • Bump version (Adrian Seyboldt)

  • Update deps (Adrian Seyboldt)

[0.7.0] - 2023-07-21

Bug Fixes

  • Check logp value in stan interface (Adrian Seyboldt)

  • Make max_energy_error writable (Adrian Seyboldt)

  • Export names of unconstrained parameters (Adrian Seyboldt)

  • Fix return values of logp benchmark function (Adrian Seyboldt)

Features

  • Export more details of divergences (Adrian Seyboldt)

  • Add extra_stanc_args argument to compile_stan_model (Chris Fonnesbeck)

Miscellaneous Tasks

  • Update dependencies (Adrian Seyboldt)

  • Add changelog (Adrian Seyboldt)

  • Bump version (Adrian Seyboldt)

Refactor

  • Hide private rust module (Adrian Seyboldt)

[0.6.0] - 2023-07-03

Features

  • Allow to update dims and coords in stan model (Adrian Seyboldt)

Miscellaneous Tasks

  • Bump version (Adrian Seyboldt)