Add GenPareto and ExtGenPareto (Generalized Pareto) distributions #2692
Workflow file for this run
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| name: pytest | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| paths: | |
| - ".github/workflows/*" | |
| - "pymc_extras/**" | |
| - "tests/**" | |
| - "setup.py" | |
| - "pyproject.toml" | |
| - "conda-envs/**" | |
| - "codecov.yml" | |
| # Cancels all previous workflow runs for pull requests that have not completed. | |
| concurrency: | |
| # The concurrency group contains the workflow name and the branch name for pull requests | |
| # or the commit hash for any other events. | |
| group: ${{ github.workflow }}-${{ github.event_name == 'pull_request' && github.head_ref || github.sha }} | |
| cancel-in-progress: true | |
| jobs: | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 | |
| - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 | |
| with: | |
| python-version: "3.12" | |
| # no-commit-to-branch fails on push to main since HEAD is main. CI lints, | |
| # it doesn't commit, so skip that one hook. | |
| - uses: pre-commit/action@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd # v3.0.1 | |
| env: | |
| SKIP: no-commit-to-branch | |
| ubuntu: | |
| needs: pre-commit | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| linker: [cvm, numba] | |
| python-version: ["3.12"] | |
| test-subset: | |
| - tests/model | |
| - tests/statespace/core/test_statespace.py | |
| - tests/statespace/filters/test_kalman_filter.py | |
| - tests/statespace --ignore tests/statespace/core/test_statespace.py --ignore tests/statespace/filters/test_kalman_filter.py | |
| - tests/distributions | |
| - tests --ignore tests/model --ignore tests/statespace --ignore tests/distributions --ignore tests/pathfinder | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| TEST_SUBSET: ${{ matrix.test-subset }} | |
| PYTENSOR_FLAGS: linker=${{ matrix.linker }} | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| steps: | |
| - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 | |
| - uses: mamba-org/setup-micromamba@d7c9bd84e824b79d2af72a2d4196c7f4300d3476 # v3.0.0 | |
| with: | |
| environment-file: conda-envs/environment-test.yml | |
| create-args: >- | |
| python=${{matrix.python-version}} | |
| environment-name: pymc-extras-test | |
| init-shell: bash | |
| cache-environment: true | |
| - name: Install pymc-extras | |
| run: | | |
| pip install -e ".[dev]" --no-deps | |
| python --version | |
| pip check | |
| - name: Run tests | |
| run: | | |
| python -m pytest --color=yes -vv --cov=pymc_extras --cov-append --cov-report=xml --cov-report term --durations=50 $TEST_SUBSET | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@57e3a136b779b570ffcdbf80b3bdc90e7fab3de2 # v6.0.0 | |
| with: | |
| env_vars: TEST_SUBSET | |
| name: ${{ matrix.os }} | |
| fail_ci_if_error: false | |
| windows: | |
| needs: pre-commit | |
| strategy: | |
| matrix: | |
| os: [windows-latest] | |
| linker: [cvm, numba] | |
| python-version: ["3.12"] | |
| test-subset: | |
| - tests/model | |
| - tests/statespace/core/test_statespace.py | |
| - tests/statespace/filters/test_kalman_filter.py | |
| - tests/statespace --ignore tests/statespace/core/test_statespace.py --ignore tests/statespace/filters/test_kalman_filter.py | |
| - tests/distributions | |
| - tests --ignore tests/model --ignore tests/statespace --ignore tests/distributions | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| TEST_SUBSET: ${{ matrix.test-subset }} | |
| PYTENSOR_FLAGS: linker=${{ matrix.linker }} | |
| defaults: | |
| run: | |
| shell: cmd /C call {0} | |
| steps: | |
| - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 | |
| - uses: mamba-org/setup-micromamba@d7c9bd84e824b79d2af72a2d4196c7f4300d3476 # v3.0.0 | |
| with: | |
| environment-file: conda-envs/environment-test.yml | |
| # Pinned: micromamba 2.6.1-0 ships a Windows binary with a missing DLL | |
| # dependency that breaks GitHub-hosted runners (STATUS_DLL_NOT_FOUND). | |
| micromamba-version: "2.6.0-0" | |
| create-args: >- | |
| python=${{matrix.python-version}} | |
| environment-name: pymc-extras-test | |
| init-shell: cmd.exe | |
| cache-environment: true | |
| - name: Install pymc-extras | |
| run: | | |
| pip install -e ".[dev]" --no-deps | |
| python --version | |
| - name: Run tests | |
| # This job uses a cmd shell, therefore the environment variable syntax is different! | |
| # The ">-" in the next line replaces newlines with spaces (see https://stackoverflow.com/a/66809682). | |
| run: >- | |
| python -m pytest --color=yes -vv --cov=pymc_extras --cov-append --cov-report=xml --cov-report term --durations=50 %TEST_SUBSET% | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@57e3a136b779b570ffcdbf80b3bdc90e7fab3de2 # v6.0.0 | |
| with: | |
| env_vars: TEST_SUBSET | |
| name: ${{ matrix.os }} | |
| fail_ci_if_error: false | |
| all_tests: | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| needs: [ pre-commit, ubuntu, windows ] | |
| steps: | |
| - name: Check all tests pass | |
| if: ${{ needs.pre-commit.result != 'success' || needs.ubuntu.result != 'success' || needs.windows.result != 'success' }} | |
| run: exit 1 |