Update pre-commit hooks and their versions

- Remove flake8 and black, add ruff
- No .clang-format file exists anymore
- Use regular shellcheck

Update pre-commit hook versions

Author: agriyakhetarpal

.flake8

@@ -3,55 +3,50 @@ default_language_version:
   python: "3.13"
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: "v5.0.0"
+    rev: "3e8a8703264a2f4a69428a0aa4dcb512790b2c8c"  # frozen: v6.0.0
     hooks:
       - id: check-case-conflict
       - id: check-merge-conflict
       - id: check-symlinks
       - id: check-yaml
-        exclude: .clang-format
       - id: debug-statements
       - id: end-of-file-fixer
       - id: mixed-line-ending
       - id: trailing-whitespace
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: "v3.19.1"
+    rev: "75992aaa40730136014f34227e0135f63fc951b4"  # frozen: v3.21.2
     hooks:
       - id: pyupgrade
         args: ["--py312-plus"]
 
   - repo: https://github.com/hadialqattan/pycln
-    rev: "v2.5.0"
+    rev: "c722dfaa45d90314cd1ad726bb561894321b278d"  # frozen: v2.6.0
     hooks:
       - id: pycln
         args: [--config=pyproject.toml]
         stages: [manual]
 
-  - repo: https://github.com/psf/black
-    rev: "25.1.0"
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: "0671d8ab202c4ac093b78433ae5baf74f3fc7246"  # frozen: v0.15.15
     hooks:
-      - id: black
-
-  - repo: https://github.com/pycqa/flake8
-    rev: "7.2.0"
-    hooks:
-      - id: flake8
-        additional_dependencies: [flake8-bugbear]
+      - id: ruff-check
+        args: [--fix, --exit-non-zero-on-fix]
+      - id: ruff-format
 
   - repo: https://github.com/pre-commit/mirrors-mypy
     rev: "v1.15.0"
     hooks:
       - id: mypy
         exclude: auditwheel_emscripten/emscripten_tools
 
-  - repo: https://github.com/shellcheck-py/shellcheck-py
-    rev: "v0.10.0.1"
+  - repo: https://github.com/koalaman/shellcheck-precommit
+    rev: 99470f5e12208ff0fb17ab81c3c494f7620a1d8d  # frozen: v0.11.0
     hooks:
       - id: shellcheck
 
   - repo: https://github.com/codespell-project/codespell
-    rev: "v2.4.1"
+    rev: "2ccb47ff45ad361a21071a7eedda4c37e6ae8c5a"  # frozen: v2.4.2
     hooks:
       - id: codespell
         args: ["-L", "te,slowy,aray,ba,nd,classs,crate,feld,lits"]