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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -76,19 +76,6 @@ environment-varirable `LD_LIBRARY_PATH`.
7676Note that generally the pysam and htslib version need to be
7777compatible. See the release notes for more information.
7878
79- Profiling
80- ---------
81-
82- Pysam's Cython code is no longer built with Python profiling enabled by default.
83- Profiling can be enabled when building it yourself from source by setting the
84- environment variable `PYSAM_PROFILE `::
85-
86- export PYSAM_PROFILE=1
87- pip install --no-binary pysam pysam
88-
89- Note that when installing via pip you will need to use ``--no-binary pysam `` to
90- ensure pip does not simply install a pre-built wheel.
91-
9279Installation from repository
9380============================
9481
@@ -117,9 +104,15 @@ the htslib/INSTALL file.
117104
118105Installing from the repository will require cython _ to be installed.
119106
107+ Profiling
108+ =========
120109
110+ Pysam's Cython code is no longer built with Python profiling enabled by default.
111+ Profiling can be enabled when building it yourself from source by setting the
112+ environment variable `PYSAM_PROFILE `, for example::
121113
114+ export PYSAM_PROFILE=1
115+ pip install --no-binary pysam pysam
122116
123-
124-
125-
117+ Note that when installing via pip you will need to use ``--no-binary pysam `` to
118+ ensure pip does not simply install a pre-built wheel.
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