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Silent use of a shared, non-isolated Python environment when using a version manager with symlinked version directories (e.g. mise) #10991

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Silent use of a shared, non-isolated Python environment when using a version manager with symlinked version directories (e.g. mise)#10991
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kind/bugSomething isn't working as expectedstatus/triageThis issue needs to be triaged

Description

@VictorColomb
VictorColomb
opened on Jul 23, 2026

Description

When Poetry itself is installed under a Python version manager that exposes the same interpreter through two different paths — an "unversioned" symlink (e.g. .../python/3.14) and the concrete "fully versioned" install directory it points to (e.g. .../python/3.14.6)
— GenericEnv.is_venv() returns True for that plain, non-isolated interpreter. This causes EnvManager.create_venv() to believe "we're already inside a virtualenv" and return early, without ever creating a project-specific isolated venv — even with virtualenvs.create = true and no active VIRTUAL_ENV. Poetry then installs/updates/removes packages directly into the shared, non-isolated interpreter, silently, with no warning that isolation was skipped.

mise uses exactly this layout: ~/.local/share/mise/installs/python/3.14 is a symlink to ~/.local/share/mise/installs/python/3.14.6. Poetry itself, installed via mise use poetry@2.4, ends up running from an internal venv built from the 3.14 symlink path,
while the interpreter's own sys.base_prefix resolves to the 3.14.6 concrete directory — two different path strings for the same, non-virtualenv install.

Reproduction

  1. Install mise, then mise use python@3.14 && mise use poetry@2.4 in an empty project directory (or replicate manually: create a real Python install at pyroot/3.14.6/, and a symlink pyroot/3.14 -> 3.14.6; install Poetry using the pyroot/3.14 interpreter).
  2. poetry init -n && poetry add requests
  3. poetry env info — expected: a fresh isolated venv. Actual: reports the shared pyroot/3.14 install directly as "Virtualenv", with no isolation and no warning.
  4. poetry sync on a second, unrelated project sharing the same pyroot/3.14 interpreter will silently install/remove that project's dependencies into the same shared install, corrupting both projects' environments.

Expected behavior

Poetry should create an isolated virtualenv (in-project or cache-dir, per config) whenever the resolved "system" interpreter is not genuinely activated as a virtualenv — regardless of whether a version manager exposes it through a symlinked, differently-named path than its own
sys.base_prefix resolves to.

Root cause

get_system_env() (poetry/utils/env/env_manager.py:598-616):

prefix, base_prefix = Path(sys.prefix), Path(cls.get_base_prefix())
env: Env = SystemEnv(prefix)
if not naive:
    env = GenericEnv(base_prefix, child_env=env)
return env

Here sys is Poetry's own running interpreter. When Poetry is installed via mise, its internal venv's sys.base_prefix is the unversioned symlink path .../python/3.14. This becomes path for the constructed GenericEnv.

GenericEnv extends VirtualEnv, whose __init__ (poetry/utils/env/virtual_env.py:35-44) does, since base=None:

if base is None:
    output = self.run_python_script(GET_BASE_PREFIX)
    self._base = Path(output.strip())

This runs a script using the .../python/3.14 interpreter to ask for its own sys.base_prefix — which resolves to the concrete .../python/3.14.6 directory (a different string than .../python/3.14, even though it's the same, non-isolated install).

GenericEnv.is_venv() (poetry/utils/env/generic_env.py:104-106):

def is_venv(self) -> bool:
    return self._path != self._base

self._path (.../python/3.14) != self._base (.../python/3.14.6) → True, even though this is not a virtualenv (running that interpreter shows sys.prefix == sys.base_prefix when queried on itself).

This True then short-circuits EnvManager.create_venv() (poetry/utils/env/env_manager.py:366-390):

env = self.get(reload=True)
if not env.is_sane():
    force = True
if env.is_venv() and not force:
    # Already inside a virtualenv.
    ...
    return env

env.is_sane() returns True, so force stays False, and is_venv() == True causes an immediate return — no venv is ever
created, and every poetry install/sync from then on operates directly on the shared interpreter.

Workarounds

Manually pre-create the in-project venv (or even just the directory + pyvenv.cfg) before running any Poetry command from that directory — this makes in_project_venv_exists() (which only checks Path.is_dir(), not is_venv()) succeed before Poetry ever reaches the
system-env fallback path.

Poetry Installation Method

other

Operating System

Linux (Fedora 44, kernel 6.x)

Poetry Version

2.4.1

Poetry Configuration

cache-dir = "/home/***/.cache/pypoetry"
data-dir = "/home/***/.local/share/mise/installs/poetry/2.4.1"
installer.max-workers = null
installer.no-binary = null
installer.only-binary = null
installer.parallel = true
installer.re-resolve = false
keyring.enabled = true
python.installation-dir = "{data-dir}/python"  # /home/***/.local/share/mise/installs/poetry/2.4.1/python
requests.max-retries = 0
solver.lazy-wheel = true
solver.min-release-age = 0
solver.min-release-age-exclude = null
solver.min-release-age-exclude-source = null
system-git-client = false
virtualenvs.create = true
virtualenvs.in-project = null
virtualenvs.options.always-copy = false
virtualenvs.options.no-pip = false
virtualenvs.options.system-site-packages = false
virtualenvs.path = "{cache-dir}/virtualenvs"  # /home/***/.cache/pypoetry/virtualenvs
virtualenvs.prompt = "{project_name}-py{python_version}"
virtualenvs.use-poetry-python = false

Python Sysconfig

sysconfig.log 
Platform: "linux-x86_64"
Python version: "3.14"
Current installation scheme: "venv"

Paths: 
  data = "/home/***/***/.venv"
  include = "/home/***/.local/share/mise/installs/python/3.14.6/include/python3.14"
  platinclude = "/home/***/.local/share/mise/installs/python/3.14.6/include/python3.14"
  platlib = "/home/***/***/.venv/lib/python3.14/site-packages"
  platstdlib = "/home/***/***/.venv/lib/python3.14"
  purelib = "/home/***/***/.venv/lib/python3.14/site-packages"
  scripts = "/home/***/***/.venv/bin"
  stdlib = "/home/***/.local/share/mise/installs/python/3.14.6/lib/python3.14"

Variables: 
  ABIFLAGS = ""
  ABI_THREAD = ""
  AC_APPLE_UNIVERSAL_BUILD = "0"
  AIX_BUILDDATE = "0"
  AIX_GENUINE_CPLUSPLUS = "0"
  ALIGNOF_LONG = "8"
  ALIGNOF_MAX_ALIGN_T = "16"
  ALIGNOF_SIZE_T = "8"
  ALT_SOABI = "0"
  ANDROID_API_LEVEL = "0"
  APP_STORE_COMPLIANCE_PATCH = ""
  AR = "ar"
  ARFLAGS = "rcs"
  BASECFLAGS = "-fno-strict-overflow -Wsign-compare -Wunreachable-code"
  BASECPPFLAGS = ""
  BASEMODLIBS = ""
  BINDIR = "/home/***/.local/share/mise/installs/python/3.14.6/bin"
  BINLIBDEST = "/home/***/.local/share/mise/installs/python/3.14.6/lib/python3.14"
  BLDLIBRARY = "-L. -lpython3.14"
  BLDSHARED = "cc -pthread -shared -Wl,-z,noexecstack -Wl,--exclude-libs,ALL"
  BOOTSTRAP_HEADERS = "\\"
  BUILDEXE = ""
  BUILDPYTHON = "python"
  BUILD_GNU_TYPE = "x86_64-unknown-linux-gnu"
  BUILD_SCRIPTS_DIR = "build/scripts-3.14"
  BYTESTR_DEPS = "\\"
  CC = "cc -pthread"
  CCSHARED = "-fPIC"
  CFLAGS = "-fno-strict-overflow -Wsign-compare -Wunreachable-code -DNDEBUG -g -O3 -Wall -O3 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC"
  CFLAGSFORSHARED = "-fPIC"
  CFLAGS_ALIASING = ""
  CFLAGS_CEVAL = "-finline-max-stacksize=512"
  CODECS_COMMON_HEADERS = "./Modules/cjkcodecs/multibytecodec.h ./Modules/cjkcodecs/cjkcodecs.h"
  COMPILEALL_OPTS = "-j0"
  CONFIGFILES = "configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in"
  CONFIGURE_CFLAGS = "-O3 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC"
  CONFIGURE_CFLAGS_NODIST = "-fno-semantic-interposition -flto=thin -g -fno-pie -std=c11 -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wstrict-prototypes -Werror=implicit-function-declaration -fvisibility=hidden -D_Py_TIER2=3 -D_Py_JIT"
  CONFIGURE_CPPFLAGS = "-O3 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC"
  CONFIGURE_LDFLAGS = "-Wl,-z,noexecstack -Wl,--exclude-libs,ALL"
  CONFIGURE_LDFLAGS_NODIST = "-fno-semantic-interposition -flto=thin -g -Wl,--emit-relocs"
  CONFIGURE_LDFLAGS_NOLTO = "-flto=thin"
  CONFIG_ARGS = "'--build=x86_64-unknown-linux-gnu' '--host=x86_64-unknown-linux-gnu' '--prefix=/install' '--with-openssl=/tools/deps' '--with-system-expat' '--with-system-libmpdec' '--without-ensurepip' '--with-readline=editline' '--with-tail-call-interp' '--enable-static-libpython-for-interpreter' '--enable-shared' '--with-mimalloc' '--enable-optimizations' '--enable-bolt' '--enable-experimental-jit=yes-off' '--with-lto' '--with-build-python=/tools/host/bin/python3.14' 'ac_cv_func_explicit_bzero=no' '--with-dbmliborder=bdb' 'build_alias=x86_64-unknown-linux-gnu' 'host_alias=x86_64-unknown-linux-gnu' 'PKG_CONFIG=pkg-config --static' 'PKG_CONFIG_PATH=/tools/deps/share/pkgconfig:/tools/deps/lib/pkgconfig' 'CC=clang' 'CFLAGS=-O3 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC ' 'LDFLAGS=-Wl,-z,noexecstack -Wl,--exclude-libs,ALL ' 'CPPFLAGS=-O3 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC ' 'PROFILE_TASK=-m test --pgo -j 4 --ignore test.test_bytes.BytesTest.test_from_format'"
  CONFINCLUDEDIR = "/home/***/.local/share/mise/installs/python/3.14.6/include"
  CONFINCLUDEPY = "/home/***/.local/share/mise/installs/python/3.14.6/include/python3.14"
  COREPYTHONPATH = ""
  COVERAGE_INFO = "/build/Python-3.14.6/coverage.info"
  COVERAGE_LCOV_OPTIONS = "--rc lcov_branch_coverage=1"
  COVERAGE_REPORT = "/build/Python-3.14.6/lcov-report"
  COVERAGE_REPORT_OPTIONS = "--rc lcov_branch_coverage=1 --branch-coverage --title "CPython 3.14 LCOV report [commit $(shell )]""
  CPPFLAGS = "-I. -I./Include -O3 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC"
  CXX = "c++ -pthread"
  DESTDIRS = "/home/***/.local/share/mise/installs/python/3.14.6 /home/***/.local/share/mise/installs/python/3.14.6/lib /home/***/.local/share/mise/installs/python/3.14.6/lib/python3.14 /home/***/.local/share/mise/installs/python/3.14.6/lib/python3.14/lib-dynload"
  DESTLIB = "/home/***/.local/share/mise/installs/python/3.14.6/lib/python3.14"
  DESTPATH = ""
  DESTSHARED = "/home/***/.local/share/mise/installs/python/3.14.6/lib/python3.14/lib-dynload"
  DFLAGS = ""
  DIRMODE = "755"
  DIST = "README.rst ChangeLog configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in Include Lib Misc Ext-dummy"
  DISTDIRS = "Include Lib Misc Ext-dummy"
  DISTFILES = "README.rst ChangeLog configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in"
  DLINCLDIR = "."
  DLLLIBRARY = ""
  DOUBLE_IS_ARM_MIXED_ENDIAN_IEEE754 = "0"
  DOUBLE_IS_BIG_ENDIAN_IEEE754 = "0"
  DOUBLE_IS_LITTLE_ENDIAN_IEEE754 = "1"
  DSYMUTIL = ""
  DSYMUTIL_PATH = ""
  DTRACE = ""
  DTRACE_DEPS = "\\"
  DTRACE_HEADERS = ""
  DTRACE_OBJS = ""
  DYNLOADFILE = "dynload_shlib.o"
  EMSCRIPTEN_DIR = "./Platforms/emscripten"
  ENABLE_IPV6 = "1"
  ENSUREPIP = "no"
  EXE = ""
  EXEMODE = "755"
  EXENAME = "/home/***/.local/share/mise/installs/python/3.14.6/bin/python3.14"
  EXPORTSFROM = ""
  EXPORTSYMS = ""
  EXTRATESTOPTS = ""
  EXTRA_CFLAGS = ""
  EXT_SUFFIX = ".cpython-314-x86_64-linux-gnu.so"
  FILEMODE = "644"
  FREEZE_MODULE = "/tools/host/bin/python3.14 ./Programs/_freeze_module.py"
  FREEZE_MODULE_BOOTSTRAP = "/tools/host/bin/python3.14 ./Programs/_freeze_module.py"
  FREEZE_MODULE_BOOTSTRAP_DEPS = "./Programs/_freeze_module.py"
  FREEZE_MODULE_DEPS = "./Programs/_freeze_module.py"
  FROZEN_FILES_IN = "\\"
  FROZEN_FILES_OUT = "\\"
  GETPGRP_HAVE_ARG = "0"
  GITBRANCH = ""
  GITTAG = ""
  GITVERSION = ""
  GNULD = "yes"
  HAVE_ACCEPT = "1"
  HAVE_ACCEPT4 = "1"
  HAVE_ACOSH = "1"
  HAVE_ADDRINFO = "1"
  HAVE_ALARM = "1"
  HAVE_ALIGNED_REQUIRED = "0"
  HAVE_ALLOCA_H = "1"
  HAVE_ALTZONE = "0"
  HAVE_ASINH = "1"
  HAVE_ASM_TYPES_H = "1"
  HAVE_ATANH = "1"
  HAVE_BACKTRACE = "1"
  HAVE_BIND = "1"
  HAVE_BIND_TEXTDOMAIN_CODESET = "1"
  HAVE_BLUETOOTH_BLUETOOTH_H = "0"
  HAVE_BLUETOOTH_H = "0"
  HAVE_BROKEN_MBSTOWCS = "0"
  HAVE_BROKEN_NICE = "0"
  HAVE_BROKEN_PIPE_BUF = "0"
  HAVE_BROKEN_POLL = "0"
  HAVE_BROKEN_POSIX_SEMAPHORES = "0"
  HAVE_BROKEN_PTHREAD_SIGMASK = "0"
  HAVE_BROKEN_SEM_GETVALUE = "0"
  HAVE_BROKEN_UNSETENV = "0"
  HAVE_BUILTIN_ATOMIC = "1"
  HAVE_BZLIB_H = "1"
  HAVE_CHFLAGS = "0"
  HAVE_CHMOD = "1"
  HAVE_CHOWN = "1"
  HAVE_CHROOT = "1"
  HAVE_CLOCK = "1"
  HAVE_CLOCK_GETRES = "1"
  HAVE_CLOCK_GETTIME = "1"
  HAVE_CLOCK_NANOSLEEP = "1"
  HAVE_CLOCK_SETTIME = "1"
  HAVE_CLOCK_T = "1"
  HAVE_CLOSEFROM = "0"
  HAVE_CLOSE_RANGE = "0"
  HAVE_COMPUTED_GOTOS = "1"
  HAVE_CONFSTR = "1"
  HAVE_CONIO_H = "0"
  HAVE_CONNECT = "1"
  HAVE_COPY_FILE_RANGE = "0"
  HAVE_CTERMID = "1"
  HAVE_CTERMID_R = "0"
  HAVE_CURSES_FILTER = "1"
  HAVE_CURSES_H = "1"
  HAVE_CURSES_HAS_KEY = "1"
  HAVE_CURSES_IMMEDOK = "1"
  HAVE_CURSES_IS_PAD = "1"
  HAVE_CURSES_IS_TERM_RESIZED = "1"
  HAVE_CURSES_RESIZETERM = "1"
  HAVE_CURSES_RESIZE_TERM = "1"
  HAVE_CURSES_SYNCOK = "1"
  HAVE_CURSES_TYPEAHEAD = "1"
  HAVE_CURSES_USE_ENV = "1"
  HAVE_CURSES_WCHGAT = "1"
  HAVE_DB_H = "1"
  HAVE_DECL_RTLD_DEEPBIND = "1"
  HAVE_DECL_RTLD_GLOBAL = "1"
  HAVE_DECL_RTLD_LAZY = "1"
  HAVE_DECL_RTLD_LOCAL = "1"
  HAVE_DECL_RTLD_MEMBER = "0"
  HAVE_DECL_RTLD_NODELETE = "1"
  HAVE_DECL_RTLD_NOLOAD = "1"
  HAVE_DECL_RTLD_NOW = "1"
  HAVE_DECL_TZNAME = "0"
  HAVE_DECL_UT_NAMESIZE = "1"
  HAVE_DEVICE_MACROS = "1"
  HAVE_DEV_PTC = "0"
  HAVE_DEV_PTMX = "1"
  HAVE_DIRECT_H = "0"
  HAVE_DIRENT_D_TYPE = "1"
  HAVE_DIRENT_H = "1"
  HAVE_DIRFD = "1"
  HAVE_DLADDR = "1"
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  HAVE_DLFCN_H = "1"
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  HAVE_DUP = "1"
  HAVE_DUP2 = "1"
  HAVE_DUP3 = "1"
  HAVE_DYLD_SHARED_CACHE_CONTAINS_PATH = "0"
  HAVE_DYNAMIC_LOADING = "1"
  HAVE_EDITLINE_READLINE_H = "0"
  HAVE_ENDIAN_H = "1"
  HAVE_EPOLL = "1"
  HAVE_EPOLL_CREATE1 = "1"
  HAVE_ERF = "1"
  HAVE_ERFC = "1"
  HAVE_ERRNO_H = "1"
  HAVE_EVENTFD = "1"
  HAVE_EXECINFO_H = "1"
  HAVE_EXECV = "1"
  HAVE_EXPLICIT_BZERO = "0"
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  HAVE_EXPM1 = "1"
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  HAVE_FCNTL_H = "1"
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  HAVE_FEXECVE = "1"
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  HAVE_GCC_ASM_FOR_X64 = "1"
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  HAVE_GCC_UINT128_T = "1"
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  TESTOPTS = ""
  TESTPATH = ""
  TESTPYTHON = "LD_LIBRARY_PATH=/build/Python-3.14.6 _PYTHON_PROJECT_BASE=/build/Python-3.14.6 _PYTHON_HOST_PLATFORM=$(_PYTHON_HOST_PLATFORM) PYTHONPATH=./Lib _PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata__linux_x86_64-linux-gnu _PYTHON_SYSCONFIGDATA_PATH=$(shell test -f pybuilddir.txt && echo /build/Python-3.14.6/`cat pybuilddir.txt`) /tools/host/bin/python3.14"
  TESTPYTHONOPTS = ""
  TESTRUNNER = "LD_LIBRARY_PATH=/build/Python-3.14.6 _PYTHON_PROJECT_BASE=/build/Python-3.14.6 _PYTHON_HOST_PLATFORM=$(_PYTHON_HOST_PLATFORM) PYTHONPATH=./Lib _PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata__linux_x86_64-linux-gnu _PYTHON_SYSCONFIGDATA_PATH=$(shell test -f pybuilddir.txt && echo /build/Python-3.14.6/`cat pybuilddir.txt`) /tools/host/bin/python3.14 -m test"
  TESTSUBDIRS = "idlelib/idle_test \\"
  TESTTIMEOUT = ""
  TEST_MODULES = "yes"
  THREAD_STACK_SIZE = "0"
  TIMEMODULE_LIB = "0"
  TM_IN_SYS_TIME = "0"
  TOKENIZER_HEADERS = "\\"
  TOKENIZER_OBJS = "\\"
  TZPATH = "/usr/share/zoneinfo:/usr/lib/zoneinfo:/usr/share/lib/zoneinfo:/etc/zoneinfo"
  UNICODE_DEPS = "\\"
  UNIVERSALSDK = ""
  UPDATE_FILE = "./Tools/build/update_file.py"
  USE_COMPUTED_GOTOS = "0"
  VERSION = "3.14"
  WEBEX2 = "web_example_pyrepl_jspi"
  WEBEX2_DIR = "./Platforms/emscripten/web_example_pyrepl_jspi/"
  WEBEX_DIR = "./Platforms/emscripten/web_example/"
  WHEEL_PKG_DIR = ""
  WINDOW_HAS_FLAGS = "0"
  WITH_DECIMAL_CONTEXTVAR = "1"
  WITH_DOC_STRINGS = "1"
  WITH_DTRACE = "0"
  WITH_DYLD = "0"
  WITH_EDITLINE = "1"
  WITH_LIBINTL = "0"
  WITH_MIMALLOC = "1"
  WITH_NEXT_FRAMEWORK = "0"
  WITH_PYMALLOC = "1"
  WITH_VALGRIND = "0"
  X87_DOUBLE_ROUNDING = "0"
  XMLLIBSUBDIRS = "xml xml/dom xml/etree xml/parsers xml/sax"
  ZIP_STDLIB = "python3.14.zip"
  abi_thread = ""
  abiflags = ""
  abs_builddir = "/build/Python-3.14.6"
  abs_srcdir = "/build/Python-3.14.6"
  base = "/home/***/Documents/tarmac_server/.venv"
  datarootdir = "/home/***/.local/share/mise/installs/python/3.14.6/share"
  exec_prefix = "/home/***/Documents/tarmac_server/.venv"
  host_exec_prefix = "/home/***/.local/share/mise/installs/python/3.14.6"
  host_prefix = "/home/***/.local/share/mise/installs/python/3.14.6"
  implementation = "Python"
  implementation_lower = "python"
  installed_base = "/home/***/.local/share/mise/installs/python/3.14.6"
  installed_platbase = "/home/***/.local/share/mise/installs/python/3.14.6"
  platbase = "/home/***/***/.venv"
  platlibdir = "lib"
  prefix = "/home/***/***/.venv"
  projectbase = "/home/***/.local/share/mise/installs/python/3.14.6/bin"
  py_version = "3.14.6"
  py_version_nodot = "314"
  py_version_nodot_plat = ""
  py_version_short = "3.14"
  srcdir = "/home/***/.local/share/mise/installs/python/3.14.6/lib/python3.14/config-3.14-x86_64-linux-gnu"
  userbase = "/home/***/.local"

Example pyproject.toml

[project]
name = "***"
version = "0"
requires-python = ">=3.14, <3.15"
readme = "README.md"
dependencies = [***]

[tool.poetry]
package-mode = false
requires-poetry = "~=2.4.0"

[...]

Poetry Runtime Logs

poetry-runtime.log 
Loading configuration file /home/***/.config/pypoetry/config.toml
[findpython:findpython] Running script: ['/home/***/.local/share/mise/installs/python/3.14/bin/python', '-Ic', 'import sys; print(sys.executable)']
[findpython:findpython] Running script: ['/home/***/.local/share/mise/installs/python/3.14/bin/python', '-Ic', 'import platform; print(platform.python_version())']

Virtualenv
Python:         3.14.6
Implementation: CPython
Path:           /home/***/.local/share/mise/installs/python/3.14
Executable:     /home/***/.local/share/mise/installs/python/3.14/bin/python3.14
Valid:          True

Base
Platform:   linux
OS:         posix
Python:     3.14.6
Path:       /home/***/.local/share/mise/installs/python/3.14.6
Executable: /home/***/.local/share/mise/installs/python/3.14.6/bin/python3.14

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