BOLT optimizations fail on Linux aarch64

[zanieb]

Bug report

Bug description:

When running the --pgo test suite with a BOLT instrumented binary, the interpreter crashes with

./python -m test --pgo --rerun --verbose3 --timeout=
python: ../cpython-ro-srcdir/Python/generated_cases.c.h:1074: _PyEval_EvalFrameDefault: Assertion `tp->tp_alloc == PyType_GenericAlloc' failed.
Aborted (core dumped)

I find this surprising since we include _PyEval_EvalFrameDefault in the BOLT skip functions — but am not familiar with the details.

The following patch successfully worked around that error

diff --git a/Python/generated_cases.c.h b/Python/generated_cases.c.h
index 810beb61d0d..d24add0afab 100644
--- a/Python/generated_cases.c.h
+++ b/Python/generated_cases.c.h
@@ -1071,7 +1071,7 @@
                 DEOPT_IF(FT_ATOMIC_LOAD_UINT32_RELAXED(tp->tp_version_tag) != type_version, CALL);
                 assert(tp->tp_new == PyBaseObject_Type.tp_new);
                 assert(tp->tp_flags & Py_TPFLAGS_HEAPTYPE);
-                assert(tp->tp_alloc == PyType_GenericAlloc);
+                assert(tp->tp_alloc == PyBaseObject_Type.tp_alloc);
                 PyHeapTypeObject *cls = (PyHeapTypeObject *)callable_o;
                 PyFunctionObject *init_func = (PyFunctionObject *)FT_ATOMIC_LOAD_PTR_ACQUIRE(cls->_spec_cache.init);
                 PyCodeObject *code = (PyCodeObject *)init_func->func_code;

Then, the profiling test run succeeded, but BOLT crashed during the apply step.

# Run bolt against the merged data to produce an optimized binary.
for bin in python; do \
  /usr/lib/llvm-19/bin/llvm-bolt "${bin}.prebolt" -o "${bin}.bolt" -data="${bin}.fdata" -update-debug-sections -skip-funcs=_PyEval_EvalFrameDefault,sre_ucs1_match/1,sre_ucs2_match/1,sre_ucs4_match/1  -reorder-blocks=ext-tsp -reorder-functions=cdsort -split-functions -icf=1 -inline-all -split-eh -reorder-functions-use-hot-size -peepholes=none -jump-tables=aggressive -inline-ap -indirect-call-promotion=all -dyno-stats -use-gnu-stack -frame-opt=hot ; \
  mv "${bin}.bolt" "${bin}"; \
done
BOLT-INFO: Target architecture: aarch64
BOLT-INFO: BOLT version: <unknown>
BOLT-INFO: first alloc address is 0x400000
BOLT-INFO: enabling relocation mode
BOLT-INFO: pre-processing profile using branch profile reader
BOLT-INFO: number of removed linker-inserted veneers: 0
BOLT-INFO: 8500 out of 12058 functions in the binary (70.5%) have non-empty execution profile
BOLT-INFO: 41 functions with profile could not be optimized
BOLT-INFO: profile for 1 objects was ignored
BOLT-INFO: removed 1 empty block
BOLT-INFO: ICF folded 678 out of 12439 functions in 5 passes. 0 functions had jump tables.
BOLT-INFO: Removing all identical functions will save 46.23 KB of code space. Folded functions were called 3909549484 times based on profile.
BOLT-INFO: ICP Total indirect calls = 1808544446, 153 callsites cover 99% of all indirect calls
 #0 0x0000aacc1be768cc (/usr/lib/llvm-19/bin/llvm-bolt+0x1ae68cc)
 #1 0x0000aacc1be74b80 (/usr/lib/llvm-19/bin/llvm-bolt+0x1ae4b80)
 #2 0x0000aacc1be77174 (/usr/lib/llvm-19/bin/llvm-bolt+0x1ae7174)
 #3 0x0000ff03feee37e0 (linux-vdso.so.1+0x7e0)
 #4 0x0000aacc1c397200 (/usr/lib/llvm-19/bin/llvm-bolt+0x2007200)
 #5 0x0000aacc1c39aa1c (/usr/lib/llvm-19/bin/llvm-bolt+0x200aa1c)
 #6 0x0000aacc1c39a9e4 (/usr/lib/llvm-19/bin/llvm-bolt+0x200a9e4)
 #7 0x0000aacc1c39a9e4 (/usr/lib/llvm-19/bin/llvm-bolt+0x200a9e4)
 #8 0x0000aacc1bf1ebc4 (/usr/lib/llvm-19/bin/llvm-bolt+0x1b8ebc4)
 #9 0x0000aacc1bf21328 (/usr/lib/llvm-19/bin/llvm-bolt+0x1b91328)
#10 0x0000aacc1becfe3c (/usr/lib/llvm-19/bin/llvm-bolt+0x1b3fe3c)
#11 0x0000aacc1aadf2f0 (/usr/lib/llvm-19/bin/llvm-bolt+0x74f2f0)
#12 0x0000ff03fe8684c4 __libc_start_call_main ./csu/../sysdeps/nptl/libc_start_call_main.h:74:3
#13 0x0000ff03fe868598 call_init ./csu/../csu/libc-start.c:128:20
#14 0x0000ff03fe868598 __libc_start_main ./csu/../csu/libc-start.c:347:5
#15 0x0000aacc1aadd4f0 (/usr/lib/llvm-19/bin/llvm-bolt+0x74d4f0)
PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
Stack dump:
0.	Program arguments: /usr/lib/llvm-19/bin/llvm-bolt python.prebolt -o python.bolt -data=python.fdata -update-debug-sections -skip-funcs=_PyEval_EvalFrameDefault,sre_ucs1_match/1,sre_ucs2_match/1,sre_ucs4_match/1 -reorder-blocks=ext-tsp -reorder-functions=cdsort -split-functions -icf=1 -inline-all -split-eh -reorder-functions-use-hot-size -peepholes=none -jump-tables=aggressive -inline-ap -indirect-call-promotion=all -dyno-stats -use-gnu-stack -frame-opt=hot
Segmentation fault (core dumped)

CPython versions tested on:

CPython main branch

Operating systems tested on:

Linux

[zanieb]

I suspect the BOLT segfault is a case of llvm/llvm-project#121554, but have not confirmed.

[liusy58]

Please give me more details such as BOLT version, thx!

[zanieb]

Hey @liusy58! This was reproduced with GitHub Actions and subsequently disabled — if you have access to aarch64 GitHub Actions runners you can reproduce that way. Otherwise, this was using llvm-19 on Ubuntu, installed with:

sudo bash -c "$(wget -O - https://apt.llvm.org/llvm.sh)" ./llvm.sh 19
sudo apt-get install bolt-19
export PATH="$(llvm-config-19 --bindir):$PATH"

You can see the details in #128845

I can try to reproduce in Docker too, but I don't have a Linux aarch64 machine around.

[zanieb]

Here's a reproduction of the segfault on llvm-20 on Debian (presumes you're in the CPython source tree)

ARG DEBIAN_VERSION=unstable

FROM debian:${DEBIAN_VERSION}

ARG LLVM_VERSION=20
ENV LLVM_VERSION=${LLVM_VERSION}

ARG DEBIAN_VERSION
ENV DEBIAN_VERSION=${DEBIAN_VERSION}

# Add LLVM GPG key
RUN apt-get update && apt-get install -y --no-install-recommends ca-certificates wget gnupg \
    && rm -rf /var/lib/apt/lists/* \
    && mkdir -p /etc/apt/keyrings \
    && wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | gpg --dearmor -o /etc/apt/keyrings/llvm.gpg

# Add LLVM repositories
RUN if [ "${DEBIAN_VERSION}" = "unstable" ]; then \
        # When using `unstable`, the suffix is omitted
        DIST_SUFFIX=""; \
    else \
        DIST_SUFFIX="-${DEBIAN_VERSION}"; \
    fi && \
    if [ "${LLVM_VERSION}" = "20" ]; then \
        # When using `20`, the suffix is omitted
        LLVM_SUFFIX=""; \
    else \
        LLVM_SUFFIX="-${LLVM_VERSION}"; \
    fi && \
    echo "deb [signed-by=/etc/apt/keyrings/llvm.gpg] http://apt.llvm.org/${DEBIAN_VERSION}/ llvm-toolchain${DIST_SUFFIX} main" >> /etc/apt/sources.list.d/llvm.list && \
    echo "deb-src [signed-by=/etc/apt/keyrings/llvm.gpg] http://apt.llvm.org/${DEBIAN_VERSION}/ llvm-toolchain${DIST_SUFFIX} main" >> /etc/apt/sources.list.d/llvm.list && \
    echo "deb [signed-by=/etc/apt/keyrings/llvm.gpg] http://apt.llvm.org/${DEBIAN_VERSION}/ llvm-toolchain${DIST_SUFFIX}${LLVM_SUFFIX} main" >> /etc/apt/sources.list.d/llvm.list && \
    echo "deb-src [signed-by=/etc/apt/keyrings/llvm.gpg] http://apt.llvm.org/${DEBIAN_VERSION}/ llvm-toolchain${DIST_SUFFIX}${LLVM_SUFFIX} main" >> /etc/apt/sources.list.d/llvm.list

# Install LLVM
RUN apt-get update -y && apt-get install -y \
    libllvm-${LLVM_VERSION}-ocaml-dev \
    libllvm${LLVM_VERSION} \
    llvm-${LLVM_VERSION} \
    llvm-${LLVM_VERSION}-dev \
    llvm-${LLVM_VERSION}-doc \
    llvm-${LLVM_VERSION}-examples \
    llvm-${LLVM_VERSION}-runtime \
    clang-${LLVM_VERSION} \
    clang-tools-${LLVM_VERSION} \
    clang-${LLVM_VERSION}-doc \
    libclang-common-${LLVM_VERSION}-dev \
    libclang-${LLVM_VERSION}-dev \
    libclang1-${LLVM_VERSION} \
    clang-format-${LLVM_VERSION} \
    python3-clang-${LLVM_VERSION} \
    clangd-${LLVM_VERSION} \
    clang-tidy-${LLVM_VERSION} \
    lldb-${LLVM_VERSION} \
    lld-${LLVM_VERSION} \
    libc++-${LLVM_VERSION}-dev \
    libc++abi-${LLVM_VERSION}-dev \
    libbolt-${LLVM_VERSION}-dev \
    bolt-${LLVM_VERSION}

# Install Python build dependencies
RUN apt-get install -y \
    make \
    libc6 \
    build-essential \
    pkg-config \
    ccache \
    gdb \
    lcov \
    libb2-dev \
    libbz2-dev \
    libffi-dev \
    libgdbm-dev \
    libgdbm-compat-dev \
    liblzma-dev \
    libncurses5-dev \
    libreadline6-dev \
    libsqlite3-dev \
    libssl-dev \
    lzma \
    strace \
    tk-dev \
    uuid-dev \
    xvfb \
    zlib1g-dev


ADD . /cpython
WORKDIR /cpython

ENV CC=clang
ENV CXX=clang++
ENV PATH="/usr/lib/llvm-${LLVM_VERSION}/bin/:$PATH"

# Build CPython 
RUN ./configure \
    --with-openssl="/usr/include/openssl" \
    --enable-slower-safety \
    --enable-safety \
    --enable-bolt

RUN make clean
RUN make -j8

Unlike llvm/llvm-project#121554, this is not "fixed" by setting disabling -update-debug-sections with the configure option:

BOLT_COMMON_FLAGS="-skip-funcs=_PyEval_EvalFrameDefault,sre_ucs1_match/1,sre_ucs2_match/1,sre_ucs4_match/1"

The stacktrace is

 BOLT-INFO: ICP Total indirect calls = 879576737, 135 callsites cover 99% of all indirect calls
  #0 0x0000aaaad325f958 (/usr/lib/llvm-20/bin/llvm-bolt+0x1c0f958)
  #1 0x0000aaaad325dc14 (/usr/lib/llvm-20/bin/llvm-bolt+0x1c0dc14)
  #2 0x0000aaaad3260064 (/usr/lib/llvm-20/bin/llvm-bolt+0x1c10064)
  #3 0x0000ffffa82377a0 (linux-vdso.so.1+0x7a0)
  #4 0x0000aaaad37d5208 (/usr/lib/llvm-20/bin/llvm-bolt+0x2185208)
  #5 0x0000aaaad37d8a80 (/usr/lib/llvm-20/bin/llvm-bolt+0x2188a80)
  #6 0x0000aaaad33138b0 (/usr/lib/llvm-20/bin/llvm-bolt+0x1cc38b0)
  #7 0x0000aaaad33176e8 (/usr/lib/llvm-20/bin/llvm-bolt+0x1cc76e8)
  #8 0x0000aaaad32c2c00 (/usr/lib/llvm-20/bin/llvm-bolt+0x1c72c00)
  #9 0x0000aaaad1e26cd0 (/usr/lib/llvm-20/bin/llvm-bolt+0x7d6cd0)
 #10 0x0000ffffa623229c __libc_start_call_main ./csu/../sysdeps/nptl/libc_start_call_main.h:74:3
 #11 0x0000ffffa623237c call_init ./csu/../csu/libc-start.c:128:20
 #12 0x0000ffffa623237c __libc_start_main ./csu/../csu/libc-start.c:347:5
 #13 0x0000aaaad1e24e70 (/usr/lib/llvm-20/bin/llvm-bolt+0x7d4e70)
 PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
 Stack dump:
 0.	Program arguments: /usr/lib/llvm-20/bin/llvm-bolt python.prebolt -o python.bolt -data=python.fdata -skip-funcs=_PyEval_EvalFrameDefault,sre_ucs1_match/1,sre_ucs2_match/1,sre_ucs4_match/1 -reorder-blocks=ext-tsp -reorder-functions=cdsort -split-functions -icf=1 -inline-all -split-eh -reorder-functions-use-hot-size -peepholes=none -jump-tables=aggressive -inline-ap -indirect-call-promotion=all -dyno-stats -use-gnu-stack -frame-opt=hot

[zanieb]

And here's a stack with LLVM 19.6.1 built from source so we get some symbols

106.0  #0 0x0000aaaaab302010 llvm::sys::PrintStackTrace(llvm::raw_ostream&, int) (/usr/bin/llvm-bolt+0x832010)
106.0  #1 0x0000aaaaab3000f0 llvm::sys::RunSignalHandlers() (/usr/bin/llvm-bolt+0x8300f0)
106.0  #2 0x0000aaaaab30285c SignalHandler(int) Signals.cpp:0:0
106.0  #3 0x0000ffffa6e127a0 (linux-vdso.so.1+0x7a0)
106.0  #4 0x0000aaaaab744220 llvm::bolt::IndirectCallPromotion::rewriteCall(llvm::bolt::BinaryBasicBlock&, llvm::MCInst const&, std::vector<std::pair<llvm::MCSymbol*, std::vector<llvm::MCInst, std::allocator<llvm::MCInst>>>, std::allocator<std::pair<llvm::MCSymbol*, std::vector<llvm::MCInst, std::allocator<llvm::MCInst>>>>>&&, std::vector<llvm::MCInst*, std::allocator<llvm::MCInst*>> const&) const (/usr/bin/llvm-bolt+0xc74220)
106.0  #5 0x0000aaaaab7482b0 llvm::bolt::IndirectCallPromotion::runOnFunctions(llvm::bolt::BinaryContext&) (/usr/bin/llvm-bolt+0xc782b0)
106.0  #6 0x0000aaaaab3ae840 llvm::bolt::BinaryFunctionPassManager::runPasses() (/usr/bin/llvm-bolt+0x8de840)
106.0  #7 0x0000aaaaab3b28c8 llvm::bolt::BinaryFunctionPassManager::runAllPasses(llvm::bolt::BinaryContext&) (/usr/bin/llvm-bolt+0x8e28c8)
106.0  #8 0x0000aaaaab35e2fc llvm::bolt::RewriteInstance::run() (/usr/bin/llvm-bolt+0x88e2fc)
106.0  #9 0x0000aaaaaac60dfc main (/usr/bin/llvm-bolt+0x190dfc)
106.0 #10 0x0000ffffa68a229c __libc_start_call_main ./csu/../sysdeps/nptl/libc_start_call_main.h:74:3
106.0 #11 0x0000ffffa68a237c call_init ./csu/../csu/libc-start.c:128:20
106.0 #12 0x0000ffffa68a237c __libc_start_main ./csu/../csu/libc-start.c:347:5
106.0 #13 0x0000aaaaaac5efb0 _start (/usr/bin/llvm-bolt+0x18efb0)
106.0 PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
106.0 Stack dump:
106.0 0.	Program arguments: /usr/bin/llvm-bolt python.prebolt -o python.bolt -data=python.fdata -update-debug-sections -skip-funcs=_PyEval_EvalFrameDefault,sre_ucs1_match/1,sre_ucs2_match/1,sre_ucs4_match/1 -reorder-blocks=ext-tsp -reorder-functions=cdsort -split-functions -icf=1 -inline-all -split-eh -reorder-functions-use-hot-size -peepholes=none -jump-tables=aggressive -inline-ap -indirect-call-promotion=all -dyno-stats -use-gnu-stack -frame-opt=hot

[liusy58]

Thank you~