changed config for napari plugin and cli

Author: qchapp

pyproject.toml

@@ -1,29 +1,10 @@
 [build-system]
-requires = ["setuptools>=42.0.0", "wheel"]
+requires = ["setuptools==68.2.2", "wheel"]
 build-backend = "setuptools.build_meta"
 
 [tool.black]
 line-length = 79
 
 [tool.isort]
 profile = "black"
-line_length = 79
-
-[project]
-name = "unet_lungs_segmentation"
-version = "1.0.5"
-description = "A U-Net model for lung segmentation in mice CT scans."
-authors = [
-    { name = "Chappuis Quentin", email = "quentin.chappuis@epfl.ch" }
-]
-license = { text = "BSD-3-Clause" }
-readme = "README.md"
-requires-python = ">=3.9"
-dependencies = [
-    "napari[all]==0.4.18",
-    "scikit-image==0.22.0",
-    "tifffile==2023.9.18",
-    "matplotlib==3.8.2",
-    "csbdeep==0.7.4",
-    "python-dotenv==1.0.0"
-]
+line_length = 79

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
-name = unet-lungs-segmentation
-version = 1.0.5
+name = unet_lungs_segmentation
+version = 1.0.6
 description = 3D U-Net model for the segmentation of the lungs in mice CT scans.
 long_description = file: README.md
 long_description_content_type = text/markdown
@@ -12,15 +12,15 @@ author = Quentin Chappuis, Center for Imaging, Ecole Polytechnique Federale de L
 author_email = quentin.chappuis@epfl.ch
 license = BSD-3-Clause
 license_files = LICENSE
+
 classifiers =
     Development Status :: 2 - Pre-Alpha
-    # Framework :: napari
+    Framework :: napari
     Intended Audience :: Developers
     License :: OSI Approved :: BSD License
     Operating System :: OS Independent
     Programming Language :: Python
     Programming Language :: Python :: 3
-    Programming Language :: Python :: 3 :: Only
     Programming Language :: Python :: 3.8
     Programming Language :: Python :: 3.9
     Programming Language :: Python :: 3.10
@@ -41,25 +41,27 @@ install_requires =
 
 python_requires = >=3.8
 include_package_data = True
+
 package_dir =
-    =src
+    = src
 
 [options.packages.find]
 where = src
 
 [options.entry_points]
 napari.manifest =
-    UNet-lungs-segmentation = unet_lungs_segmentation:napari.yaml
+    unet-lungs-segmentation = unet_lungs_segmentation:napari.yaml
+
 console_scripts = 
     uls_predict_image = unet_lungs_segmentation.cli:cli_predict_image
     uls_predict_folder = unet_lungs_segmentation.cli:cli_predict_folder
 
 [options.extras_require]
 testing =
     tox
-    pytest  # https://docs.pytest.org/en/latest/contents.html
-    pytest-cov  # https://pytest-cov.readthedocs.io/en/latest/
-    pytest-qt  # https://pytest-qt.readthedocs.io/en/latest/
+    pytest
+    pytest-cov
+    pytest-qt
     napari
     pyqt5
 

src/unet_lungs_segmentation/napari.yaml

@@ -1,12 +1,12 @@
-name: UNet-lungs-segmentation
+name: unet-lungs-segmentation
 display_name: Mouse lungs segmentation
 contributions:
   commands:
-    - id: UNet-lungs-segmentation.predict
+    - id: unet-lungs-segmentation.predict
       title: Lungs segmentation
       python_name: unet_lungs_segmentation.napari_plugin:LungsSegmentationWidget
   widgets:
-    - command: UNet-lungs-segmentation.predict
+    - command: unet-lungs-segmentation.predict
       display_name: Lungs segmentation
   sample_data:
   - key: lung_ct