Update metadata, badge, and citation for 2025-06-02

Author: PhaedrusFlow

.zenodo.json

@@ -5,7 +5,7 @@
   "language": "eng",
   "upload_type": "software",
   "access_right": "open",
-  "version": "e05139f",
+  "version": "3dd6376",
   "publication_date": "2025-06-02",
   "creators": [
     {