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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning. Full commit history is available in the commit logs.

Version 0.1

Unreleased

0.1.4 (2025-03-28)

Added

Use rapids_singlecell, cupy and cuml to accelerate cluster marker computation on GPUs {pr}37.
Add the possibility to softly enforce adherence to expected cell types {pr}42.

Changed

Run cluster label harmonization also for a single sample {pr}37.
Re-format prompts into a dataclass {pr}42.

Fixed

Fixed a bug with integer sample labels {pr}37.

0.1.3 (2025-02-07)

Added

Added tests for the single-sample case {pr}29.
Refer to issues and PRs with sphinx {pr}30.

Removed

Removed tenacity for query retries {pr}28.

Fixed

Fixed _get_annotation_summary_string for the single-sample case {pr}29.
Fixed the expected cell type marker test by adding additional marker genes {pr}28.

0.1.2 (2025-01-29)

Added

Update the documentation, in particular the installation instructions.

0.1.1 (2025-01-29)

Added

Initial push to PyPI

0.1.0 (2025-01-29)

Initial package release