[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Author: pre-commit-ci[bot]

docs/extensions/typed_returns.py

@@ -12,7 +12,7 @@
 def _process_return(lines: Iterable[str]) -> Generator[str, None, None]:
     for line in lines:
         if m := re.fullmatch(r"(?P<param>\w+)\s+:\s+(?P<type>[\w.]+)", line):
-            yield f'-{m["param"]} (:class:`~{m["type"]}`)'
+            yield f"-{m['param']} (:class:`~{m['type']}`)"
         else:
             yield line
 

src/cell_annotator/sample_annotator.py

@@ -203,7 +203,7 @@ def annotate_clusters(self, min_markers: int, expected_marker_genes: dict[str, l
         else:
             expected_markers_string = ""
 
-        actual_markers_all = "\n".join([f'- Cluster {i}: {", ".join(gs)}' for i, gs in self.marker_genes.items()])
+        actual_markers_all = "\n".join([f"- Cluster {i}: {', '.join(gs)}" for i, gs in self.marker_genes.items()])
 
         # loop over clusters to annotate
         logger.debug("Iterating over clusters to annotate.")

src/cell_annotator/utils.py

@@ -144,7 +144,7 @@ def _format_annotation(df: pd.DataFrame, filter_by: str, cell_type_key: str) ->
     """Format the annotation DataFrame by filtering and generating summary strings."""
     filtered_df = df[df[cell_type_key] != filter_by]
     return "\n".join(
-        f' - Cluster {index}: {row["marker_genes"]} -> {row["cell_type_harmonized"]}'
+        f" - Cluster {index}: {row['marker_genes']} -> {row['cell_type_harmonized']}"
         for index, row in filtered_df.iterrows()
     )