From 321fe8e8ba793e641887485ff00ab1782654400e Mon Sep 17 00:00:00 2001 From: Marius Lange Date: Fri, 7 Feb 2025 10:27:35 +0100 Subject: [PATCH 1/4] Prepare release v0.1.3 --- CHANGELOG.md | 21 +++++++++++++++++++-- docs/conf.py | 8 ++++++++ 2 files changed, 27 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3fdeafa..639147d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,17 +11,34 @@ and this project adheres to [Semantic Versioning][]. Full commit history is avai ## Version 0.1 +### Unreleased + +### 0.1.3 (2025-02-07) + +#### Added + +- Added tests for the single-sample case {pr}`29`. + +#### Removed + +- Removed `tenacity` for query retries {pr}`28`. + +#### Fixed + +- Fixed `_get_annotation_summary_string` for the single-sample case {pr}`29`. +- Fixed the expected cell type marker test by adding additional marker genes {pr}`28`. + ### 0.1.2 (2025-01-29) #### Added -- Update the documentation, in particular the installation instructions. +- Update the documentation, in particular the installation instructions. ### 0.1.1 (2025-01-29) #### Added -- Initial push to PyPI +- Initial push to PyPI ### 0.1.0 (2025-01-29) diff --git a/docs/conf.py b/docs/conf.py index 5ac2326..875ea20 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -59,6 +59,7 @@ "IPython.sphinxext.ipython_console_highlighting", "sphinxext.opengraph", *[p.stem for p in (HERE / "extensions").glob("*.py")], + "sphinx.ext.extlinks", ] # autodoc + napoleon configuration @@ -101,6 +102,13 @@ "numpy": ("https://numpy.org/doc/stable/", None), } +# extlinks config +extlinks = { + "issue": (f"{repository_url}/issues/%s", "#%s"), + "pr": (f"{repository_url}/pull/%s", "#%s"), + "ghuser": ("https://github.com/%s", "@%s"), +} + # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. From 188fd6594b78b03dc7c6cb72e174bf12488080a8 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Fri, 7 Feb 2025 09:28:49 +0000 Subject: [PATCH 2/4] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- CHANGELOG.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 639147d..14e220c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -17,28 +17,28 @@ and this project adheres to [Semantic Versioning][]. Full commit history is avai #### Added -- Added tests for the single-sample case {pr}`29`. +- Added tests for the single-sample case {pr}`29`. #### Removed -- Removed `tenacity` for query retries {pr}`28`. +- Removed `tenacity` for query retries {pr}`28`. #### Fixed -- Fixed `_get_annotation_summary_string` for the single-sample case {pr}`29`. -- Fixed the expected cell type marker test by adding additional marker genes {pr}`28`. +- Fixed `_get_annotation_summary_string` for the single-sample case {pr}`29`. +- Fixed the expected cell type marker test by adding additional marker genes {pr}`28`. ### 0.1.2 (2025-01-29) #### Added -- Update the documentation, in particular the installation instructions. +- Update the documentation, in particular the installation instructions. ### 0.1.1 (2025-01-29) #### Added -- Initial push to PyPI +- Initial push to PyPI ### 0.1.0 (2025-01-29) From 52a7f2f405f80d8458178dde6ffe51e19719e57c Mon Sep 17 00:00:00 2001 From: Marius Lange Date: Fri, 7 Feb 2025 10:29:13 +0100 Subject: [PATCH 3/4] Update Changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 639147d..77e820a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -18,6 +18,7 @@ and this project adheres to [Semantic Versioning][]. Full commit history is avai #### Added - Added tests for the single-sample case {pr}`29`. +- Refer to issues and PRs with sphinx {pr}`30`. #### Removed From 3d096a9191ec7222f887c95d788d0173da5161ba Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Fri, 7 Feb 2025 09:31:12 +0000 Subject: [PATCH 4/4] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- CHANGELOG.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 77e820a..a51c8a6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -17,29 +17,29 @@ and this project adheres to [Semantic Versioning][]. Full commit history is avai #### Added -- Added tests for the single-sample case {pr}`29`. -- Refer to issues and PRs with sphinx {pr}`30`. +- Added tests for the single-sample case {pr}`29`. +- Refer to issues and PRs with sphinx {pr}`30`. #### Removed -- Removed `tenacity` for query retries {pr}`28`. +- Removed `tenacity` for query retries {pr}`28`. #### Fixed -- Fixed `_get_annotation_summary_string` for the single-sample case {pr}`29`. -- Fixed the expected cell type marker test by adding additional marker genes {pr}`28`. +- Fixed `_get_annotation_summary_string` for the single-sample case {pr}`29`. +- Fixed the expected cell type marker test by adding additional marker genes {pr}`28`. ### 0.1.2 (2025-01-29) #### Added -- Update the documentation, in particular the installation instructions. +- Update the documentation, in particular the installation instructions. ### 0.1.1 (2025-01-29) #### Added -- Initial push to PyPI +- Initial push to PyPI ### 0.1.0 (2025-01-29)