build.gradle

/*
 * Copyright 2024-2026, Quilt Data Inc.
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 */

plugins {
    id 'io.nextflow.nextflow-plugin' version '1.0.0-beta.14'
    id 'jacoco'
}

// Plugin version: bump here to release a new version.
version = '1.0.1'
group = 'io.nextflow'

dependencies {
    implementation 'com.quiltdata:quiltcore:0.1.7'
    implementation 'com.fasterxml.jackson.core:jackson-databind:2.19.0'
    implementation 'com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.19.0'
    implementation 'commons-io:commons-io:2.19.0'
}

// The io.nextflow.nextflow-plugin gradle plugin wires `test` to depend on
// `assemble` (which transitively runs `packagePlugin`). On Windows,
// `packagePlugin` fails with "character to be escaped is missing" because
// the upstream task uses `String.replaceAll(..., File.separator)` and `\`
// is an escape character in regex replacements
// (see https://github.com/nextflow-io/nextflow-plugin-gradle/issues/20).
// Until that upstream bug is fixed, we sever the test->assemble link so the
// test suite can run on Windows. `make assemble` / `make package` /
// `make release` still trigger packagePlugin on platforms where it works.
tasks.named('test') { task ->
    task.setDependsOn(task.getDependsOn().findAll { it != tasks.assemble && it != 'assemble' })
    task.dependsOn 'jar'
    useJUnitPlatform()
    // Required to run Nextflow / Groovy reflection-heavy tests on JDK 9+.
    jvmArgs([
        '--add-opens=java.base/java.lang=ALL-UNNAMED',
        '--add-opens=java.base/java.io=ALL-UNNAMED',
        '--add-opens=java.base/java.nio=ALL-UNNAMED',
        '--add-opens=java.base/java.nio.file.spi=ALL-UNNAMED',
        '--add-opens=java.base/java.net=ALL-UNNAMED',
        '--add-opens=java.base/java.util=ALL-UNNAMED',
        '--add-opens=java.base/java.util.concurrent.locks=ALL-UNNAMED',
        '--add-opens=java.base/java.util.concurrent.atomic=ALL-UNNAMED',
        '--add-opens=java.base/sun.nio.ch=ALL-UNNAMED',
        '--add-opens=java.base/sun.nio.fs=ALL-UNNAMED',
        '--add-opens=java.base/sun.net.www.protocol.http=ALL-UNNAMED',
        '--add-opens=java.base/sun.net.www.protocol.https=ALL-UNNAMED',
        '--add-opens=java.base/sun.net.www.protocol.ftp=ALL-UNNAMED',
        '--add-opens=java.base/sun.net.www.protocol.file=ALL-UNNAMED',
        '--add-opens=java.base/jdk.internal.misc=ALL-UNNAMED',
    ])
}

// JaCoCo line-coverage gate: 70% minimum, mirroring the pre-migration
// (single-subproject) build. Wired into `check` below.
jacocoTestReport {
    dependsOn tasks.named('test')
    reports {
        xml.required = true
        html.required = true
    }
}

jacocoTestCoverageVerification {
    dependsOn tasks.named('jacocoTestReport')
    violationRules {
        rule {
            limit {
                counter = 'LINE'
                minimum = 0.7
            }
        }
    }
}

tasks.named('check') {
    dependsOn tasks.named('jacocoTestCoverageVerification')
}

nextflowPlugin {
    nextflowVersion = '24.10.0'
    provider = 'Quilt Data, Inc.'
    className = 'nextflow.quilt.QuiltPlugin'
    extensionPoints = [
        'nextflow.quilt.QuiltObserverFactory',
        'nextflow.quilt.nio.QuiltPathFactory',
        'nextflow.quilt.nio.QuiltPathSerializer'
    ]
}