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mis-constructed inputs #302

Description

@drernie

publishing: cheesy_descartes
WARN: findQuiltPath: multiple '#package' in quilt+s3://udp-spec#package=nf-quilt%2fdynamic&path=inputs%2fudp-spec#package=nf-quilt%2fsource@c4e44f6932%2fa_folder%2fTHING_ONE.md

params.input = 'quilt+s3://udp-spec#package=nf-quilt/source@c4e44f6932'

process transfer {
    publishDir(
        /* groovylint-disable-next-line LineLength */
        path: 'quilt+s3://udp-spec?Status=In-flight&Program=CCR4&sample_name=sample123&OwnerEmail=ownerexample.com&author_name=JohnDoe&project_code=PROJ_ABC&flowcell_id=FC123456&jira_id=JIRA-456&instrument_name=NextSeq2000&xaira_registry=xaira-scratch&session_id=abc123-def456-ghi789&workflow=None#package=nf-quilt/dynamic',
        mode: 'copy',
    )
    container 'ubuntu:20.04'

    input:
    path x

    output:
    path 'inputs/**'

    script:
    """
    mkdir -p data
    mkdir -p inputs
    cp -r $x inputs/
    echo inputs/$x
    """
}

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