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James471James471
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Refactor code, move julia code to extern and minor bug fixes
1 parent 7659878 commit 531c9bc

20 files changed

Lines changed: 136 additions & 81 deletions

‎.github/workflows/codespell.yml‎

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@@ -39,4 +39,4 @@ jobs:
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- name: Run codespell
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run: |
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codespell -I .github/workflows/codespell_ignore.txt, --ignore-words=.github/workflows/codespell_ignore.txt --skip="src/problems/RadStreamingPhotoionization/photoionization-julia/Manifest.toml" src
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codespell -I .github/workflows/codespell_ignore.txt, --ignore-words=.github/workflows/codespell_ignore.txt src

‎extern/Microphysics‎

src/problems/RadStreamingPhotoionization/photoionization-julia/Manifest.toml renamed to extern/photoionization-julia/Manifest.toml

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src/problems/RadStreamingPhotoionization/photoionization-julia/Project.toml renamed to extern/photoionization-julia/Project.toml

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src/problems/RadStreamingPhotoionization/photoionization-julia/fraction.jl renamed to extern/photoionization-julia/fraction.jl

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src/problems/RadStreamingPhotoionization/photoionization-julia/no_energy.csv renamed to extern/photoionization-julia/no_energy.csv

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src/problems/RadStreamingPhotoionization/photoionization-julia/with_energy.csv renamed to extern/photoionization-julia/with_energy.csv

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inputs/PhotoionizationTests/StreamingNoEnergyChange.toml renamed to inputs/OneZonePhotoionizationNoEnergy.toml

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@@ -1,9 +1,9 @@
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# *****************************************************************
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# Problem size and geometry
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# *****************************************************************
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geometry.prob_lo = 0.0 0.0 0.0
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geometry.prob_hi = 100000000000.0 100000000000.0 100000000000.0
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geometry.is_periodic = 1 1 1
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geometry.prob_lo = [0.0, 0.0, 0.0]
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geometry.prob_hi = [100000000000.0, 100000000000.0, 100000000000.0]
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quokka.bc = ["periodic", "periodic", "periodic"]
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# *****************************************************************
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# VERBOSITY
@@ -13,7 +13,7 @@ amr.v = 0 # verbosity in Amr
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# *****************************************************************
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# Resolution and refinement
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# *****************************************************************
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amr.n_cell = 8 8 8
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amr.n_cell = [8, 8, 8]
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amr.max_level = 0 # number of levels = max_level + 1
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max_timesteps = 500000
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do_reflux = 0

inputs/PhotoionizationTests/StreamingPhotoheatingRecCooling.toml renamed to inputs/OneZonePhotoionizationWithEnergy.toml

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@@ -1,9 +1,9 @@
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# *****************************************************************
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# Problem size and geometry
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# *****************************************************************
4-
geometry.prob_lo = 0.0 0.0 0.0
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geometry.prob_hi = 100000000000.0 100000000000.0 100000000000.0
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geometry.is_periodic = 1 1 1
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geometry.prob_lo = [0.0, 0.0, 0.0]
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geometry.prob_hi = [100000000000.0, 100000000000.0, 100000000000.0]
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quokka.bc = ["periodic", "periodic", "periodic"]
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# *****************************************************************
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# VERBOSITY
@@ -13,7 +13,7 @@ amr.v = 0 # verbosity in Amr
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# *****************************************************************
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# Resolution and refinement
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# *****************************************************************
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amr.n_cell = 8 8 8
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amr.n_cell = [8, 8, 8]
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amr.max_level = 0 # number of levels = max_level + 1
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max_timesteps = 500000
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do_reflux = 0

inputs/PhotoionizationTests/StromgrenNoRecombination.toml renamed to inputs/StromgrenNoRecombination.toml

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@@ -1,9 +1,9 @@
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# *****************************************************************
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# Problem size and geometry
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# *****************************************************************
4-
geometry.prob_lo = 0.0 0.0 0.0
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geometry.prob_hi = 5e13 5e13 5e13
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quokka.bc = reflecting reflecting reflecting
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geometry.prob_lo = [0.0, 0.0, 0.0]
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geometry.prob_hi = [5e13, 5e13, 5e13]
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quokka.bc = ["reflecting", "reflecting", "reflecting"]
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# *****************************************************************
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# VERBOSITY
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# *****************************************************************
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# Resolution and refinement
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# *****************************************************************
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amr.n_cell = 16 16 16
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amr.n_cell = [16, 16, 16]
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amr.max_level = 0 # number of levels = max_level + 1
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#max_timesteps = 10
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do_reflux = 0
@@ -45,7 +45,7 @@ integrator.rtol_rad_flux = 1e-14
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integrator.rtol_enuc = 1e-14
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plotfile_interval = 1
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plotfile_prefix = StrmNoRec
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plotfile_prefix = "StrmNoRec"
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network.recombination_switch = 0
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network.energy_switch = 0

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