Merge branch 'development' into mengxuan/duststoppingtime

Author: mxchen39

.github/workflows/check_changes.yml

@@ -35,7 +35,7 @@ jobs:
       has_workflow_changes: ${{ steps.set-output.outputs.has_workflow_changes }}
       has_specific_workflow_changes: ${{ steps.set-output.outputs.has_specific_workflow_changes }}
     steps:
-      - uses: actions/checkout@v6.0.1
+      - uses: actions/checkout@v6
       - uses: dorny/paths-filter@v3
         id: changes
         with:

.github/workflows/codeql.yml

@@ -21,7 +21,7 @@ jobs:
     outputs:
       code-changed: ${{ steps.changes.outputs.code }}
     steps:
-      - uses: actions/checkout@v6.0.1
+      - uses: actions/checkout@v6
       - uses: dorny/paths-filter@v3
         id: changes
         with:

.github/workflows/docs-toctree.yml

@@ -12,7 +12,7 @@ jobs:
     name: Validate MkDocs navigation
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6.0.1
+      - uses: actions/checkout@v6
       - name: Set up Python
         uses: actions/setup-python@v6
         with:

.github/workflows/rocm-diskgalaxy-container.yml

@@ -28,13 +28,13 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
         with:
           submodules: recursive
           ref: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.sha || github.sha }}
 
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # v3
+        uses: docker/setup-buildx-action@8d2750c68a42422c14e847fe6c8ac0403b4cbd6f # v3
 
       - name: Log in to GHCR
         if: ${{ github.event_name == 'push' || env.IS_INTERNAL_PR == 'true' }}

docs/markdown/mhd_module.md

@@ -3,7 +3,7 @@
 # *****************************************************************
 geometry.prob_lo     =  0.0  0.0  0.0 
 geometry.prob_hi     =  1.0  1.0  1.0
-geometry.is_periodic =  1    1    1
+quokka.bc = periodic periodic periodic
 
 # *****************************************************************
 # VERBOSITY

extern/turbulence

@@ -3,7 +3,7 @@
 # *****************************************************************
 geometry.prob_lo     =  0.0  0.0  0.0 
 geometry.prob_hi     =  1.0  1.0  1.0
-geometry.is_periodic =  1    1    1
+quokka.bc = periodic periodic periodic
 
 # *****************************************************************
 # VERBOSITY

inputs/Advection.in

@@ -3,7 +3,7 @@
 # *****************************************************************
 geometry.prob_lo     =  0.0  0.0  0.0 
 geometry.prob_hi     =  1.0  1.0  1.0
-geometry.is_periodic =  1    1    1
+quokka.bc = periodic periodic periodic
 
 # *****************************************************************
 # VERBOSITY

inputs/Advection2D.in

@@ -3,7 +3,7 @@
 # *****************************************************************
 geometry.prob_lo     =  0.0  0.0  0.0 
 geometry.prob_hi     =  1.0  1.0  1.0
-geometry.is_periodic =  1    1    1
+quokka.bc = periodic periodic periodic
 
 # *****************************************************************
 # VERBOSITY