R-CMD-check.yaml

Ignore `NA`s when pruning cache files #1653

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Job	Run time
ubuntu-latest (devel)	2m 57s
ubuntu-latest (oldrel-1)	2m 34s
windows-latest (release)	3m 32s
ubuntu-latest (oldrel-3)	16m 4s
macos-latest (release)	2m 49s
ubuntu-latest (oldrel-2)	4m 8s
ubuntu-latest (oldrel-4)	3m 17s
ubuntu-latest (release)	3m 41s
	39m 2s