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setup script creates the whole projectdirectory again inside of the project #67

@konstantinengelmayer

Description

@konstantinengelmayer

I created a new default link2GI project with RStudio. It created this structure.
| testingProject.Rproj
|
+---data
| +---clean
| +---results
| +---run
| ---source
+---docs
| ---figures
+---src
| | main-control.R
| | post-processing.R
| | pre-processing.R
| | processing.R
| |
| +---configs
| | config-master.yml
| | post-processing.yml
| | pre-processing.yml
| | processing.yml
| | README.md
| |
| ---functions
| 000_setup.R

Looks good so far! But now...
After running the setup script it added the whole directory again inside my project:
| testingProject.Rproj
|
+---data
| +---clean
| +---results
| +---run
| ---source
+---docs
| ---figures
+---src
| | main-control.R
| | post-processing.R
| | pre-processing.R
| | processing.R
| |
| +---configs
| | config-master.yml
| | post-processing.yml
| | pre-processing.yml
| | processing.yml
| | README.md
| |
| ---functions
| 000_setup.R
+---testingProject
| +---data
| | +---clean
| | +---results
| | +---run
| | ---source
| +---docs
| | ---figures
| +---src
| | +---configs
| | ---functions
| ---tmp
| ---tmp
---tmp
---tmp
Also the dir vairables refers to the wrong and newly created directory.

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