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import io
import os
import pickle
import sys
import zipfile
from dataclasses import dataclass
from enum import Enum
from http import HTTPStatus
from pathlib import Path
import numpy as np
from flask import Flask, jsonify, request, send_file, send_from_directory
from flask_cors import CORS
from pydub import AudioSegment
from werkzeug.utils import secure_filename
from feature_extraction.run_extraction import feature_extract_segments
from feature_extraction.strf_analyzer import STRFAnalyzer
from preprocess.preprocess import preprocess_audio
from profiler import profile
from globals import OUTDIR
sys.path.append("preprocess/")
sys.path.append("feature_extraction/")
app = Flask(__name__)
CORS(app, origins="*", supports_credentials=True)
uploads_path = Path(OUTDIR / "uploads")
strf_analyzer = STRFAnalyzer()
@app.route("/")
def home():
return "Flask server is running."
class SD_Class(Enum):
PRE = "pre" # Non-sleep deprived
POST = "post" # Sleep deprived
BALANCED = "balanced"
@dataclass
class Classification:
sd: SD_Class
classes: list[SD_Class]
scores: list[float]
decision_scores: list[float]
sd_decision_score: float
nsd_decision_score: float
confidence_score: float
avg_decision_score: float
result: str
is_success: bool
sd_prob: float
nsd_prob: float
# other fields here
def into_json(self):
return jsonify(
{
"class": self.sd.value,
"classes": [c.value for c in self.classes],
"scores": self.scores,
"decision_scores": self.decision_scores,
"sd_decision_score": self.sd_decision_score,
"nsd_decision_score": self.nsd_decision_score,
"sd_prob": self.sd_prob,
"nsd_prob": self.nsd_prob,
"confidence_score": self.confidence_score,
"decision_score": self.avg_decision_score,
"result": self.result,
}
)
@app.route("/plots/<uuid:uid>/<path:filename>")
def get_plot(filename, uid):
print(f"Requesting plot: {filename}")
path = (Path(OUTDIR / "feature_analysis/strf_plots") /
str(uid)).resolve(strict=True)
return send_from_directory(path, filename)
@app.route("/segments/<uuid:uid>")
def Segments(uid):
segments_dir = (
Path(OUTDIR / "preprocess/preprocessed_audio/processed_audio")
/ str(uid)
/ "segmented_audio"
)
# Construct an in-memory zip file
zip_buffer = io.BytesIO()
with zipfile.ZipFile(zip_buffer, "w") as zip_file:
for _, file in enumerate(segments_dir.glob("segment_*.wav")):
zip_file.write(file, arcname=file.name)
# reset buffer pointer back to 0
zip_buffer.seek(0)
return send_file(
zip_buffer,
mimetype="application/zip",
download_name="segments.zip",
as_attachment=True,
)
@app.route("/upload/<uuid:uid>", methods=["POST"])
def Upload(uid):
if "audio" not in request.files:
return jsonify({"error": "No audio file in request."}), HTTPStatus.BAD_REQUEST
audio_file = request.files["audio"]
# parse noiseRemovalMethod request
noise_removal_method = request.form.get("noiseRemovalMethod", "none")
print(f"Noise removal method selected: {noise_removal_method}")
if audio_file.filename:
(uploads_path / str(uid)).mkdir(parents=True, exist_ok=True)
file_path = uploads_path / \
str(uid) / secure_filename(audio_file.filename)
audio_file.save(file_path)
wav_file = convertWAV(file_path)
clf = classify(wav_file, uid, noise_removal_method)
return (
clf.into_json(),
HTTPStatus.OK if clf.is_success else HTTPStatus.BAD_REQUEST,
)
return (
jsonify({"error": "There was a problem saving the file"}),
HTTPStatus.INTERNAL_SERVER_ERROR,
)
def predict_features(features, svm, pca):
if not features:
print("!!!!!!!!!! Error: no features accepted !!!!!!!!!!")
print("Make sure the audio recording length is at least 15 seconds.")
is_success = False
return 0, 0, [], [], 0.0, is_success
nsd_counter = 0
sd_counter = 0
sum_nsd_prob = 0.0
sum_sd_prob = 0.0
sd_prob_scores = []
nsd_prob_scores = []
classes = []
sd_decision_scores = []
nsd_decision_scores = []
decision_scores = []
confidence_scores = []
avg_confidence_score = 0.0
for i, feature in enumerate(features):
print(f"\nProcessing feature {i + 1}")
# Flatten and normalize
feature_flat = np.asarray(feature).flatten()
feature_norm = (
feature_flat / np.max(np.abs(feature_flat))
if np.max(np.abs(feature_flat)) != 0
else feature_flat
)
feature_reshaped = feature_norm.reshape(1, -1)
expected_features = pca.components_.shape[1]
if feature_flat.shape[0] != expected_features:
raise ValueError(f"Feature mismatch! Expected {expected_features}, got {feature_flat.shape[0]}.")
# PCA transformation
feature_pca = pca.transform(feature_reshaped)
# Prediction
y_pred = svm.predict(feature_pca)
predicted_label = y_pred[0]
print(f"Predicted class for feature {i + 1}: {predicted_label}")
print(f"SVM classes: {svm.classes_}")
# Decision score (distance from hyperplane)
decision_score = abs(float(svm.decision_function(feature_pca)[0]))
decision_scores.append(decision_score)
print(f"Decision Score: {decision_score:.4f}")
# Confidence (probability) score
sd_prob, nsd_prob = 0.0, 0.0
if hasattr(svm, "predict_proba"):
probs = svm.predict_proba(feature_pca)[0]
sd_index = np.where(svm.classes_ == SD_Class.POST.value)[0][0]
nsd_index = np.where(svm.classes_ == SD_Class.PRE.value)[0][0]
sd_prob = float(probs[sd_index])
nsd_prob = float(probs[nsd_index])
# Output NSD and SD Probabilities
print(f"Non-sleep-deprived Probability Score: {nsd_prob}")
print(f"Sleep-deprived Probability Score: {sd_prob}")
# Assign class and count
if predicted_label == SD_Class.POST.value:
sd_counter += 1
classes.append(SD_Class.POST)
confidence_scores.append(sd_prob)
sd_decision_scores.append(decision_score)
else:
nsd_counter += 1
classes.append(SD_Class.PRE)
confidence_scores.append(nsd_prob)
nsd_decision_scores.append(decision_score)
sum_sd_prob += sd_prob
sum_nsd_prob += nsd_prob
sd_prob_scores.append(sd_prob)
nsd_prob_scores.append(nsd_prob)
# Final calculations
avg_sd_prob = sum_sd_prob / len(sd_prob_scores)
avg_nsd_prob = sum_nsd_prob / len(nsd_prob_scores)
avg_decision_score = np.mean(decision_scores) if decision_scores else 0.0
avg_sd_decision_score = np.mean(
sd_decision_scores) if sd_decision_scores else 0.0
avg_nsd_decision_score = (
np.mean(nsd_decision_scores) if nsd_decision_scores else 0.0
)
# Adjusted confidence scoring
if sd_counter == nsd_counter:
adjusted_confidence_score = 50 + (avg_sd_prob - avg_nsd_prob) * 50
elif sd_counter > nsd_counter:
adjusted_confidence_score = 50 + (avg_sd_prob * 50)
else:
adjusted_confidence_score = avg_nsd_prob * 50
# Feedback message
if adjusted_confidence_score >= 80:
print("\nClassification: Highly Sleep-deprived")
elif adjusted_confidence_score >= 50:
print("\nClassification: Moderate Sleep-deprived")
else:
print("\nClassification: Non-sleep-deprived")
# Average Confidence Score
avg_confidence_score = sum(confidence_scores) / len(confidence_scores)
# Output summaries
print(f"\nAverage SD Probability: {avg_sd_prob:.4f}")
print(f"Average NSD Probability: {avg_nsd_prob:.4f}")
print(f"Pre (NSD) features count: {nsd_counter}")
print(f"Post (SD) features count: {sd_counter}")
print(f"Adjusted Confidence Score: {adjusted_confidence_score:.2f}")
print(f"Average Confidence Score: {avg_confidence_score:.2f}")
print(f"Average Decision Score (all): {avg_decision_score:.4f}")
print(f"Average Decision Score (sd only): {avg_sd_decision_score:.4f}")
print(f"Average Decision Score (nsd only): {avg_nsd_decision_score:.4f}")
is_success = True
return (
avg_sd_prob,
avg_nsd_prob,
nsd_counter,
sd_counter,
classes,
confidence_scores,
decision_scores,
avg_sd_decision_score,
avg_nsd_decision_score,
adjusted_confidence_score,
avg_confidence_score,
avg_decision_score,
is_success,
)
@profile
def classify(audio_path: Path, uid, noise_removal_method) -> Classification:
"""
Predict the class labels for the given STM features array of 3D using the trained SVM and PCA models.
Args:
features (list): List of feature arrays (e.g., STRF features).
svm_path (str): Path to the trained SVM model (.pkl file).
pca_path (str): Path to the trained PCA model (.pkl file).
"""
svm_path = Path("./updated_model/svm_pca_strf_ncomp24_2025-11-10.pkl")
print(f"Model: {svm_path}")
test_sample_path = Path("./strf_data_new.pkl")
# Load the SVM and PCA models using pickle
with open(svm_path, "rb") as f:
data = pickle.load(f)
svm = data["svm"]
pca = data["pca"]
# Define the output directory, if necessary to be stored
output_dir_processed = Path(OUTDIR / "preprocess/preprocessed_audio/processed_audio") / str(
uid
)
output_dir_segmented = output_dir_processed / "segmented_audio"
# Preprocess
segments, sr = preprocess_audio(
audio_path, output_dir_processed, noise_removal_method
)
# Print details
print(f"Number of segments: {len(segments)}")
print(f"Sampling rate: {sr} Hz")
# Feature Extraction
features = feature_extract_segments(segments, sr)
print("Feature Extraction Complete.")
# Compute and save STRFs
avg_scale_rate, avg_freq_rate, avg_freq_scale = strf_analyzer.compute_avg_strf(
features
)
strf_analyzer.save_plots(
avg_scale_rate,
avg_freq_rate,
avg_freq_scale,
Path(OUTDIR / "feature_analysis/strf_plots") / str(uid),
)
print(f"Avg STRF computation and plots complete.")
# test_sample = pickle.load(test_sample_path)
# with open(test_sample_path, "rb") as f:
# test_sample = pickle.load(f)
# print(type(test_sample), test_sample)
# np.set_printoptions(threshold=np.inf)
#
# magnitude_strf = np.abs(test_sample)
#
# # STRF (128, 8, 22)
# test_sample = np.mean(magnitude_strf, axis=0)
# print(test_sample["strf"])
(
avg_sd_prob,
avg_nsd_prob,
pre_count,
post_count,
classes,
confidence_scores,
decision_scores,
avg_sd_decision_score,
avg_nsd_decision_score,
adjusted_confidence_score,
avg_confidence_score,
avg_decision_score,
is_success,
) = predict_features(features, svm, pca)
print(f"\nsuccess: {is_success}\n")
if adjusted_confidence_score == 50:
result_text = "The classification score is balanced."
sd_class = SD_Class.BALANCED
elif adjusted_confidence_score > 50:
result_text = "You are sleep-deprived."
sd_class = SD_Class.POST
else:
result_text = "You are non-sleep-deprived."
sd_class = SD_Class.PRE
return Classification(
sd_prob=avg_sd_prob,
nsd_prob=avg_nsd_prob,
sd=sd_class,
scores=confidence_scores,
decision_scores=decision_scores,
sd_decision_score=avg_sd_decision_score,
nsd_decision_score=avg_nsd_decision_score,
classes=classes,
confidence_score=avg_confidence_score,
avg_decision_score=avg_decision_score,
result=result_text,
is_success=is_success,
)
def convertWAV(audio: Path) -> Path:
if audio.suffix == ".wav":
return audio
wav = audio.with_suffix(".wav")
file = AudioSegment.from_file(audio)
file.export(wav, format="wav")
audio.unlink()
return wav