Could you please provide the link of processed example data?

[Johnny3333]

Thank you for providing such an innovative work in integration of Xenium and Visium.
I'm wondering if you could provide the download link of preprocessed example data? As shown below, the BRCA.dmp
import pickle vi, xe, R = pickle.load(open("BRCA.dmp", "rb")) vi.var_names_make_unique() xe.var_names_make_unique() if hasattr(vi.X, "toarray"): vi.X = vi.X.toarray() if hasattr(xe.X, "toarray"): xe.X = xe.X.toarray()

[hz7140]

The dump file can be downloaded here:
https://drive.google.com/file/d/1jp97eZewYvOA42bodX8WrhiSOJE1XxKV/view?usp=sharing

[Johnny3333]

Thank you so much! I've downloaded the file and met some issues when loading it: vi, xe, R = pickle.load(open("BRCA.dmp", "rb"))

I met the Error:

KeyError Traceback (most recent call last)
Cell In[1], line 2
1 import pickle
----> 2 vi, xe, R = pickle.load(open("BRCA.dmp", "rb"))
3 vi.var_names_make_unique()
4 xe.var_names_make_unique()

File ~/miniconda3/lib/python3.12/site-packages/anndata/_core/file_backing.py:45, in AnnDataFileManager.setstate(self, state)
43 def setstate(self, state):
44 self.dict = state.copy()
---> 45 self.dict["_adata_ref"] = weakref.ref(state["_adata_ref"])

KeyError: '_adata_ref'

I was wondering if it is because of the different version of anndata? Can you provide the package version for us? like the requirements.txt file, containing packages' version.