Consolidate docs into AGENTS.md; add .grok agent config #369
ahmed-shuaibiAnnotations
15 errors and 8 warnings
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ruff (CPY001):
analysis/burden_aware_co_demo.py#L1
analysis/burden_aware_co_demo.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/build_atlas_data.py#L1
analysis/build_atlas_data.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/bmr_sensitivity.py#L1
analysis/bmr_sensitivity.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/bmr_passenger_proportions.py#L1
analysis/bmr_passenger_proportions.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/bmr_overcorrection_check.py#L1
analysis/bmr_overcorrection_check.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/bmr_fdr_comparison.py#L1
analysis/bmr_fdr_comparison.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/bmr_calibration.py#L1
analysis/bmr_calibration.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/analyze_gene_pair_sample_cooccurrences.py#L1
analysis/analyze_gene_pair_sample_cooccurrences.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/analyze_dialect_rho_distributions.py#L1
analysis/analyze_dialect_rho_distributions.py:1:1: CPY001 Missing copyright notice at top of file
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ruff (CPY001):
analysis/__init__.py#L1
analysis/__init__.py:1:1: CPY001 Missing copyright notice at top of file
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test (3.11)
Canceling since a higher priority waiting request for CI-refs/heads/main exists
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test (3.11)
The operation was canceled.
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test (3.12)
Canceling since a higher priority waiting request for CI-refs/heads/main exists
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test (3.12)
The operation was canceled.
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CI
Canceling since a higher priority waiting request for CI-refs/heads/main exists
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lint
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, astral-sh/ruff-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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lint
The process '/usr/bin/git' failed with exit code 128
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test (3.10)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-python@v5. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (3.10)
The process '/usr/bin/git' failed with exit code 128
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test (3.11)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-python@v5. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (3.11)
The process '/usr/bin/git' failed with exit code 128
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test (3.12)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-python@v5. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (3.12)
The process '/usr/bin/git' failed with exit code 128
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