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style: drop unused root arg from load_passengers
1 parent 0fea157 commit a082c8e

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Lines changed: 2 additions & 2 deletions

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analysis/bmr_passenger_proportions.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -72,7 +72,7 @@ def proportion_auc(ranked: pd.DataFrame, passengers: set, horizon: int = _K) ->
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return float(np.trapezoid(props, dx=1) / horizon)
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75-
def load_passengers(cohort: str, root: Path) -> set:
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def load_passengers(cohort: str) -> set:
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"""Per-cohort event-level likely-passenger set (top non-OncoKB genes)."""
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fn = Path("data") / "event_level_likely_passengers" / f"{cohort}.txt"
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if not fn.exists():
@@ -88,7 +88,7 @@ def evaluate_cohort(cohort: str, root: Path) -> list[dict]:
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return []
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n_samples = pd.read_csv(cnt_fn, index_col=0).shape[0]
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eps = compute_epsilon_threshold(n_samples)
91-
passengers = load_passengers(cohort, root)
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passengers = load_passengers(cohort)
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rows = []
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for bmr in _BMRS:

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