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Description
I’m interested in reproducing the analyses of the mouse cerebral cortex injury (GSE226211) and spinal cord injury (GSE184369) datasets presented in your paper "Anomaly detection in spatial transcriptomics via spatially localized density comparison".
While the Sardine code is available in the repo, I noticed the paper and current codebase do not include the preprocessing code for these real mouse datasets (e.g., steps for data loading, quality control, normalization, or alignment with STalign as mentioned in the manuscript).
Could you please share the preprocessing code or provide guidance on how to prepare these datasets to match the inputs used in your experiments? This would be crucial for accurately replicating your results.
Thanks for your help!