Add log-transform support to SleepStatsAgreement (Euser et al. 2008)
#392
Workflow file for this run
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| name: PyTest | |
| on: | |
| push: | |
| branches: [master] | |
| paths: | |
| - 'src/**' | |
| - 'tests/**' | |
| - 'pyproject.toml' | |
| pull_request: | |
| branches: [master] | |
| paths: | |
| - 'src/**' | |
| - 'tests/**' | |
| - 'pyproject.toml' | |
| env: | |
| FORCE_COLOR: 1 | |
| UV_SYSTEM_PYTHON: 1 | |
| YASA_DATA_DIR: ${{ github.workspace }}/.yasa_data | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up uv | |
| uses: astral-sh/setup-uv@v7 | |
| - name: Cache sample data | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/.yasa_data | |
| key: yasa-sample-data-14564285 | |
| - name: Install libomp (macOS) | |
| if: ${{ matrix.platform == 'macos-latest' }} | |
| run: brew install libomp | |
| - name: Install dependencies | |
| run: uv pip install --group=test ".[full]" | |
| - name: Test with pytest | |
| run: uv run pytest --verbose | |
| # Test against different dependency versions | |
| test-dependency-combinations: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest, windows-latest] | |
| deps: | |
| # Minimum supported versions (as defined in pyproject.toml) | |
| - python-version: "3.10" | |
| numpy: "numpy==1.22.4" | |
| scipy: "scipy==1.8.1" | |
| pandas: "pandas==2.1.1" | |
| mne: "mne==1.3.0" | |
| label: "minimum-versions" | |
| # Latest available versions (already tested above) | |
| # - python-version: "3.13" | |
| # numpy: "numpy" | |
| # scipy: "scipy" | |
| # pandas: "pandas" | |
| # mne: "mne" | |
| # label: "latest-versions" | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: Set up Python ${{ matrix.deps.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.deps.python-version }} | |
| - name: Set up uv | |
| uses: astral-sh/setup-uv@v7 | |
| - name: Cache sample data | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/.yasa_data | |
| key: yasa-sample-data-14564285 | |
| - name: Install setuptools (required by mne==1.3.0) | |
| if: ${{ matrix.deps.label == 'minimum-versions' }} | |
| run: uv pip install setuptools | |
| - name: Install numpy (${{ matrix.deps.label }}) | |
| run: uv pip install "${{ matrix.deps.numpy }}" | |
| - name: Install dependencies (${{ matrix.deps.label }}) | |
| run: >- | |
| uv pip install --group=test ".[full]" | |
| "${{ matrix.deps.scipy }}" | |
| "${{ matrix.deps.pandas }}" | |
| "${{ matrix.deps.mne }}" | |
| - name: Display installed versions | |
| run: | | |
| python -c "import numpy; print(f'numpy: {numpy.__version__}')" | |
| python -c "import scipy; print(f'scipy: {scipy.__version__}')" | |
| python -c "import pandas; print(f'pandas: {pandas.__version__}')" | |
| python -c "import mne; print(f'mne: {mne.__version__}')" | |
| - name: Test with pytest | |
| run: pytest --verbose | |
| coverage: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: Cache sample data | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/.yasa_data | |
| key: yasa-sample-data-14564285 | |
| - name: Set up Python | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version-file: "pyproject.toml" | |
| - name: Set up uv | |
| uses: astral-sh/setup-uv@v7 | |
| - name: Install dependencies | |
| run: uv pip install --group=test ".[full]" | |
| - name: Run tests with coverage | |
| run: pytest --cov --cov-report=xml --verbose | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| fail_ci_if_error: true |