yasa/.github/workflows/python_tests.yml at a3fed3fce263a0c3e479794ea0d9a4cd5e44e04f · raphaelvallat/yasa · GitHub

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name: PyTest

on:
  push:
    branches: [master]
    paths:
      - 'src/**'
      - 'tests/**'
      - 'pyproject.toml'
  pull_request:
    branches: [master]
    paths:
      - 'src/**'
      - 'tests/**'
      - 'pyproject.toml'

env:
  FORCE_COLOR: 1
  UV_SYSTEM_PYTHON: 1
  YASA_DATA_DIR: ${{ github.workspace }}/.yasa_data

jobs:
  test:
    strategy:
      fail-fast: false
      matrix:
        platform: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ["3.10", "3.11", "3.12", "3.13"]

    runs-on: ${{ matrix.platform }}

    steps:
      - uses: actions/checkout@v6

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v6
        with:
          python-version: ${{ matrix.python-version }}

      - name: Set up uv
        uses: astral-sh/setup-uv@v7

      - name: Cache sample data
        uses: actions/cache@v4
        with:
          path: ${{ github.workspace }}/.yasa_data
          key: yasa-sample-data-14564285

      - name: Install libomp (macOS)
        if: ${{ matrix.platform == 'macos-latest' }}
        run: brew install libomp

      - name: Install dependencies
        run: uv pip install --group=test ".[full]"

      - name: Test with pytest
        run: uv run pytest --verbose

  # Test against different dependency versions
  test-dependency-combinations:
    strategy:
      fail-fast: false
      matrix:
        platform: [ubuntu-latest, windows-latest]
        deps:
          # Minimum supported versions (as defined in pyproject.toml)
          - python-version: "3.10"
            numpy: "numpy==1.22.4"
            scipy: "scipy==1.8.1"
            pandas: "pandas==2.1.1"
            mne: "mne==1.3.0"
            numba: "numba==0.57.1"
            label: "minimum-versions"

          # Latest available versions (already tested above)
        #   - python-version: "3.13"
        #     numpy: "numpy"
        #     scipy: "scipy"
        #     pandas: "pandas"
        #     mne: "mne"
        #     numba: "numba"
        #     label: "latest-versions"

    runs-on: ${{ matrix.platform }}
    steps:
      - uses: actions/checkout@v6

      - name: Set up Python ${{ matrix.deps.python-version }}
        uses: actions/setup-python@v6
        with:
          python-version: ${{ matrix.deps.python-version }}

      - name: Set up uv
        uses: astral-sh/setup-uv@v7

      - name: Cache sample data
        uses: actions/cache@v4
        with:
          path: ${{ github.workspace }}/.yasa_data
          key: yasa-sample-data-14564285

      - name: Install setuptools (required by mne==1.3.0)
        if: ${{ matrix.deps.label == 'minimum-versions' }}
        run: uv pip install setuptools

      - name: Install numpy (${{ matrix.deps.label }})
        run: uv pip install "${{ matrix.deps.numpy }}"

      - name: Install dependencies (${{ matrix.deps.label }})
        run: >-
          uv pip install --group=test ".[full]"
          "${{ matrix.deps.scipy }}"
          "${{ matrix.deps.pandas }}"
          "${{ matrix.deps.mne }}"
          "${{ matrix.deps.numba }}"

      - name: Display installed versions
        run: |
          python -c "import numpy; print(f'numpy: {numpy.__version__}')"
          python -c "import scipy; print(f'scipy: {scipy.__version__}')"
          python -c "import pandas; print(f'pandas: {pandas.__version__}')"
          python -c "import mne; print(f'mne: {mne.__version__}')"
          python -c "import numba; print(f'numba: {numba.__version__}')"

      - name: Test with pytest
        run: pytest --verbose

  coverage:
    runs-on: ubuntu-latest
    env:
      NUMBA_DISABLE_JIT: "1"
    steps:
      - uses: actions/checkout@v6

      - name: Cache sample data
        uses: actions/cache@v4
        with:
          path: ${{ github.workspace }}/.yasa_data
          key: yasa-sample-data-14564285

      - name: Set up Python
        uses: actions/setup-python@v6
        with:
          python-version-file: "pyproject.toml"

      - name: Set up uv
        uses: astral-sh/setup-uv@v7

      - name: Install dependencies
        run: uv pip install --group=test ".[full]"

      - name: Run tests with coverage
        run: pytest --cov --cov-report=xml --verbose

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v5
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          files: ./coverage.xml
          fail_ci_if_error: true