Cargo.toml

[package]
name = "genomics-dataloader"
version = "0.5.3-dev0"
edition = "2021"

[lib]
name = "gdata"
crate-type = ["cdylib"]

[dependencies]
zstd = { version = "0.13", features = ["zstdmt"] }
anyhow = "1.0"
average = "0.16"
ndarray = { version = "0.16", features = ["serde"] }
bigtools = "0.5"
bincode = { version = "2", features = ["serde"] }
itertools = "0.14"
indexmap = { version = "2.10", features = ["serde", "rayon"] }
env_logger = "0.11"
half = { version = "2.6", features = ["serde"] }
hdf5 = { package = "hdf5-metno", version = "0.10" }
hdf5-sys = { package = "hdf5-metno-sys", version = "0.10", features = ["static", "zlib", "threadsafe"] }
indicatif = "0.18"
log = "0.4"
flate2 = "1"
pyo3-log = "0.12"
noodles = { version = "0.100.0", features = ["core", "fasta", "sam", "bam", "gff"] }
bed-utils = { version = "0.9.2", features = ["serde"] }
tokio = "1.34"
bstr = "1"
numcodecs-zfp = "0.5"
reqwest = { version = "0.12", features = ["stream"] }
tokio-stream = "0.1"
tempfile = "3.20.0"
serde_json = "1.0"
serde = "1.0"
numpy = "0.25"
rayon = "1.10"
rand = "0.9"
rand_chacha = "0.9"

[dependencies.pyo3]
version = "0.25"
features = ["extension-module", "anyhow", "indexmap"]

[target.'cfg(not(target_env = "msvc"))'.dependencies]
tikv-jemallocator = {version = "0.6", features = ["disable_initial_exec_tls"]}