idmodels/pyproject.toml at main · reichlab/idmodels · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
[project]
name = "idmodels"
description = "A Python module for modeling infectious disease."
license = {text = "MIT License"}
readme = "README.md"
requires-python = ">=3.11"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
]
dynamic = ["version"]

dependencies = [
    "iddata @ git+https://github.com/reichlab/iddata",
    "lightgbm",
    "numpy",
    "pandas~=2.0",  # pandas 3.0 breaks compatibility; remove cap once validated
    "sarix @ git+https://github.com/reichlab/sarix@35eea2379a9790e0457b1aed41d13509e5d5056f",
    "scikit-learn",
    "tqdm",
    "timeseriesutils @ git+https://github.com/reichlab/timeseriesutils"
]

[project.optional-dependencies]
dev = [
    "coverage",
    "pre-commit",
    "pytest",
    "ruff"
]

[project.urls]
Repository = "https://github.com/reichlab/idmodels.git"

[build-system]
# Minimum requirements for the build system to execute.
requires = ["setuptools", "wheel"]

[tool.pytest.ini_options]
tmp_path_retention_policy = "none"
testpaths = [
    "tests",
]

[tool.setuptools]
packages = {find = {where = ["src"]}}

[tool.setuptools.package-data]
idmodels = ["data/*.csv", "data/*.md"]

[tool.ruff]
line-length = 120
lint.extend-select = ["I", "Q"]

[tool.ruff.lint.flake8-quotes]
inline-quotes = "double"

[tool.ruff.format]
quote-style = "double"

[tool.setuptools.dynamic]
version = {attr = "idmodels.__version__"}

[tool.codespell]
ignore-words-list = "hsa"