From 096b1fa0e1a591a698b419678acf3c5895502065 Mon Sep 17 00:00:00 2001
From: ilan-gold <ilanbassgold@gmail.com>
Date: Mon, 13 Apr 2026 18:55:31 +0200
Subject: [PATCH 1/6] fix: weaken lower bounds

---
 pyproject.toml | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index a2632c2..dc254f8 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -9,9 +9,9 @@ readme = "README.md"
 requires-python = ">=3.11,<4.0"
 dependencies = [
     "anndata (>=0.11)",
-    "numba (>=0.63.1)",
-    "pandas (>=2.3.3,<3.0.0)",
-    "scipy (>=1.16.3,<2.0.0)",
+    "numba (>=0.60)",
+    "pandas (>=2.2.2,<3.0.0)",
+    "scipy (>=1.13,<2.0.0)",
     "tqdm (>=4.67.1,<5.0.0)",
     "joblib (>=1.5.3,<2.0.0)",
     "loguru (>=0.7.3,<0.8.0)",
@@ -40,7 +40,6 @@ dev = [
     "memory-profiler (>=0.61.0,<0.62.0)",
     "pytest-regex (>=0.2.0,<0.3.0)",
     "memray (>=1.19.1,<2.0.0)",
-    "pdex (>=0.2.0)",
     "ipdb (>=0.13.13,<0.14.0)",
     "tomli (>=2.4.1,<3.0.0)",
 ]

From 84294782f2bdce37823aa0911d1e15bb57c7619f Mon Sep 17 00:00:00 2001
From: ilan-gold <ilanbassgold@gmail.com>
Date: Mon, 13 Apr 2026 19:04:05 +0200
Subject: [PATCH 2/6] fix: stop upper bounding anndata because it handle pandas
 3

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index dc254f8..4955e3b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -10,7 +10,7 @@ requires-python = ">=3.11,<4.0"
 dependencies = [
     "anndata (>=0.11)",
     "numba (>=0.60)",
-    "pandas (>=2.2.2,<3.0.0)",
+    "pandas (>=2.2.2)",
     "scipy (>=1.13,<2.0.0)",
     "tqdm (>=4.67.1,<5.0.0)",
     "joblib (>=1.5.3,<2.0.0)",

From 65cc4624fe0f85b9ecd3a192c9f865cb109108ee Mon Sep 17 00:00:00 2001
From: ilan-gold <ilanbassgold@gmail.com>
Date: Tue, 14 Apr 2026 11:28:50 +0200
Subject: [PATCH 3/6] fix: lock file + split up deps a bit

---
 .github/workflows/python-package.yaml |   2 +-
 poetry.lock                           | 246 +++++++++++++-------------
 pyproject.toml                        |  13 +-
 tests/test_asymptotic_wilcoxon.py     |   2 +-
 4 files changed, 133 insertions(+), 130 deletions(-)

diff --git a/.github/workflows/python-package.yaml b/.github/workflows/python-package.yaml
index 813a32f..969a3a2 100644
--- a/.github/workflows/python-package.yaml
+++ b/.github/workflows/python-package.yaml
@@ -27,7 +27,7 @@ jobs:
         python -m pip install --upgrade poetry
         python -m pip install --upgrade tox
         python -m pip install flake8
-        python -m poetry install --with dev
+        python -m poetry install --with test
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
diff --git a/poetry.lock b/poetry.lock
index e60ecfa..f9b5694 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 2.3.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 2.3.4 and should not be changed by hand.
 
 [[package]]
 name = "accessible-pygments"
@@ -37,7 +37,7 @@ version = "0.12.10"
 description = "Annotated data."
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "anndata-0.12.10-py3-none-any.whl", hash = "sha256:e3d940d8e34373dc250f998c1011c1da52721f980de9d83a0599daa2baa286e5"},
     {file = "anndata-0.12.10.tar.gz", hash = "sha256:73a73c99ca50400eb9dc7f2fdd400cf677ea4bb9ef1f7c04691c0fc557e43d7f"},
@@ -72,7 +72,7 @@ version = "1.14.0"
 description = "A wrapper around NumPy and other array libraries to make them compatible with the Array API standard"
 optional = false
 python-versions = ">=3.10"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "array_api_compat-1.14.0-py3-none-any.whl", hash = "sha256:ed5af1f9b6595a199c942505f281ec994892556b6efc24679a0501e87a7d6279"},
     {file = "array_api_compat-1.14.0.tar.gz", hash = "sha256:c819ba707f5c507800cb545f7e6348ff1ecc46538381d9ad9b371ffc9cd6d784"},
@@ -95,7 +95,7 @@ version = "3.0.1"
 description = "Annotate AST trees with source code positions"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "asttokens-3.0.1-py3-none-any.whl", hash = "sha256:15a3ebc0f43c2d0a50eeafea25e19046c68398e487b9f1f5b517f7c0f40f976a"},
     {file = "asttokens-3.0.1.tar.gz", hash = "sha256:71a4ee5de0bde6a31d64f6b13f2293ac190344478f081c3d1bccfcf5eacb0cb7"},
@@ -161,7 +161,7 @@ version = "3.5.0"
 description = "Validate configuration and produce human readable error messages."
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "cfgv-3.5.0-py2.py3-none-any.whl", hash = "sha256:a8dc6b26ad22ff227d2634a65cb388215ce6cc96bbcc5cfde7641ae87e8dacc0"},
     {file = "cfgv-3.5.0.tar.gz", hash = "sha256:d5b1034354820651caa73ede66a6294d6e95c1b00acc5e9b098e917404669132"},
@@ -296,12 +296,12 @@ version = "0.4.6"
 description = "Cross-platform colored terminal text."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
-groups = ["main", "dev", "doc"]
+groups = ["main", "benchmark", "doc", "test"]
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
-markers = {main = "platform_system == \"Windows\" or sys_platform == \"win32\"", dev = "platform_system == \"Windows\" or sys_platform == \"win32\"", doc = "sys_platform == \"win32\""}
+markers = {main = "platform_system == \"Windows\" or sys_platform == \"win32\"", benchmark = "platform_system == \"Windows\" or sys_platform == \"win32\"", doc = "sys_platform == \"win32\"", test = "platform_system == \"Windows\" or sys_platform == \"win32\""}
 
 [[package]]
 name = "contourpy"
@@ -309,7 +309,7 @@ version = "1.3.3"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
 python-versions = ">=3.11"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "contourpy-1.3.3-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:709a48ef9a690e1343202916450bc48b9e51c049b089c7f79a267b46cffcdaa1"},
     {file = "contourpy-1.3.3-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:23416f38bfd74d5d28ab8429cc4d63fa67d5068bd711a85edb1c3fb0c3e2f381"},
@@ -401,7 +401,7 @@ version = "0.12.1"
 description = "Composable style cycles"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "cycler-0.12.1-py3-none-any.whl", hash = "sha256:85cef7cff222d8644161529808465972e51340599459b8ac3ccbac5a854e0d30"},
     {file = "cycler-0.12.1.tar.gz", hash = "sha256:88bb128f02ba341da8ef447245a9e138fae777f6a23943da4540077d3601eb1c"},
@@ -417,7 +417,7 @@ version = "5.2.1"
 description = "Decorators for Humans"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "decorator-5.2.1-py3-none-any.whl", hash = "sha256:d316bb415a2d9e2d2b3abcc4084c6502fc09240e292cd76a76afc106a1c8e04a"},
     {file = "decorator-5.2.1.tar.gz", hash = "sha256:65f266143752f734b0a7cc83c46f4618af75b8c5911b00ccb61d0ac9b6da0360"},
@@ -429,7 +429,7 @@ version = "0.4.0"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "distlib-0.4.0-py2.py3-none-any.whl", hash = "sha256:9659f7d87e46584a30b5780e43ac7a2143098441670ff0a49d5f9034c54a6c16"},
     {file = "distlib-0.4.0.tar.gz", hash = "sha256:feec40075be03a04501a973d81f633735b4b69f98b05450592310c0f401a4e0d"},
@@ -453,7 +453,7 @@ version = "0.8.1.post1"
 description = "Python package for configuring a python package"
 optional = false
 python-versions = ">=3.8"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "donfig-0.8.1.post1-py3-none-any.whl", hash = "sha256:2a3175ce74a06109ff9307d90a230f81215cbac9a751f4d1c6194644b8204f9d"},
     {file = "donfig-0.8.1.post1.tar.gz", hash = "sha256:3bef3413a4c1c601b585e8d297256d0c1470ea012afa6e8461dc28bfb7c23f52"},
@@ -472,7 +472,7 @@ version = "2.2.1"
 description = "Get the currently executing AST node of a frame, and other information"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "executing-2.2.1-py2.py3-none-any.whl", hash = "sha256:760643d3452b4d777d295bb167ccc74c64a81df23fb5e08eff250c425a4b2017"},
     {file = "executing-2.2.1.tar.gz", hash = "sha256:3632cc370565f6648cc328b32435bd120a1e4ebb20c77e3fdde9a13cd1e533c4"},
@@ -487,7 +487,7 @@ version = "1.3.1"
 description = "Fast array utilities with minimal dependencies."
 optional = false
 python-versions = ">=3.11"
-groups = ["dev"]
+groups = ["test"]
 markers = "python_version >= \"3.12\""
 files = [
     {file = "fast_array_utils-1.3.1-py3-none-any.whl", hash = "sha256:7617322b29c9f3a8e4c046355ecf653bbee581245787243ea06212a1a56fa611"},
@@ -515,7 +515,7 @@ version = "3.25.2"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "filelock-3.25.2-py3-none-any.whl", hash = "sha256:ca8afb0da15f229774c9ad1b455ed96e85a81373065fb10446672f64444ddf70"},
     {file = "filelock-3.25.2.tar.gz", hash = "sha256:b64ece2b38f4ca29dd3e810287aa8c48182bbecd1ae6e9ae126c9b35f1382694"},
@@ -527,7 +527,7 @@ version = "4.62.1"
 description = "Tools to manipulate font files"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "fonttools-4.62.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:ad5cca75776cd453b1b035b530e943334957ae152a36a88a320e779d61fc980c"},
     {file = "fonttools-4.62.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0b3ae47e8636156a9accff64c02c0924cbebad62854c4a6dbdc110cd5b4b341a"},
@@ -619,7 +619,7 @@ version = "1.8.0"
 description = "A python wrapper of the C library 'Google CRC32C'"
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "google_crc32c-1.8.0-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:0470b8c3d73b5f4e3300165498e4cf25221c7eb37f1159e221d1825b6df8a7ff"},
     {file = "google_crc32c-1.8.0-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:119fcd90c57c89f30040b47c211acee231b25a45d225e3225294386f5d258288"},
@@ -662,7 +662,7 @@ version = "3.16.0"
 description = "Read and write HDF5 files from Python"
 optional = false
 python-versions = ">=3.10"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "h5py-3.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e06f864bedb2c8e7c1358e6c73af48519e317457c444d6f3d332bb4e8fa6d7d9"},
     {file = "h5py-3.16.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:ec86d4fffd87a0f4cb3d5796ceb5a50123a2a6d99b43e616e5504e66a953eca3"},
@@ -723,7 +723,7 @@ version = "2.6.17"
 description = "File identification library for Python"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "identify-2.6.17-py2.py3-none-any.whl", hash = "sha256:be5f8412d5ed4b20f2bd41a65f920990bdccaa6a4a18a08f1eefdcd0bdd885f0"},
     {file = "identify-2.6.17.tar.gz", hash = "sha256:f816b0b596b204c9fdf076ded172322f2723cf958d02f9c3587504834c8ff04d"},
@@ -779,7 +779,7 @@ version = "8.7.1"
 description = "Read metadata from Python packages"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "importlib_metadata-8.7.1-py3-none-any.whl", hash = "sha256:5a1f80bf1daa489495071efbb095d75a634cf28a8bc299581244063b53176151"},
     {file = "importlib_metadata-8.7.1.tar.gz", hash = "sha256:49fef1ae6440c182052f407c8d34a68f72efc36db9ca90dc0113398f2fdde8bb"},
@@ -803,7 +803,7 @@ version = "2.3.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["benchmark", "test"]
 files = [
     {file = "iniconfig-2.3.0-py3-none-any.whl", hash = "sha256:f631c04d2c48c52b84d0d0549c99ff3859c98df65b3101406327ecc7d53fbf12"},
     {file = "iniconfig-2.3.0.tar.gz", hash = "sha256:c76315c77db068650d49c5b56314774a7804df16fee4402c1f19d6d15d8c4730"},
@@ -815,7 +815,7 @@ version = "0.13.13"
 description = "IPython-enabled pdb"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "ipdb-0.13.13-py3-none-any.whl", hash = "sha256:45529994741c4ab6d2388bfa5d7b725c2cf7fe9deffabdb8a6113aa5ed449ed4"},
     {file = "ipdb-0.13.13.tar.gz", hash = "sha256:e3ac6018ef05126d442af680aad863006ec19d02290561ac88b8b1c0b0cfc726"},
@@ -831,7 +831,7 @@ version = "9.10.0"
 description = "IPython: Productive Interactive Computing"
 optional = false
 python-versions = ">=3.11"
-groups = ["dev"]
+groups = ["test"]
 markers = "python_version == \"3.11\""
 files = [
     {file = "ipython-9.10.0-py3-none-any.whl", hash = "sha256:c6ab68cc23bba8c7e18e9b932797014cc61ea7fd6f19de180ab9ba73e65ee58d"},
@@ -865,7 +865,7 @@ version = "9.11.0"
 description = "IPython: Productive Interactive Computing"
 optional = false
 python-versions = ">=3.12"
-groups = ["dev"]
+groups = ["test"]
 markers = "python_version >= \"3.12\""
 files = [
     {file = "ipython-9.11.0-py3-none-any.whl", hash = "sha256:6922d5bcf944c6e525a76a0a304451b60a2b6f875e86656d8bc2dfda5d710e19"},
@@ -898,7 +898,7 @@ version = "1.1.1"
 description = "Defines a variety of Pygments lexers for highlighting IPython code."
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "ipython_pygments_lexers-1.1.1-py3-none-any.whl", hash = "sha256:a9462224a505ade19a605f71f8fa63c2048833ce50abc86768a0d81d876dc81c"},
     {file = "ipython_pygments_lexers-1.1.1.tar.gz", hash = "sha256:09c0138009e56b6854f9535736f4171d855c8c08a563a0dcd8022f78355c7e81"},
@@ -913,7 +913,7 @@ version = "0.19.2"
 description = "An autocompletion tool for Python that can be used for text editors."
 optional = false
 python-versions = ">=3.6"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "jedi-0.19.2-py2.py3-none-any.whl", hash = "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9"},
     {file = "jedi-0.19.2.tar.gz", hash = "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0"},
@@ -933,7 +933,7 @@ version = "3.1.6"
 description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
-groups = ["dev", "doc"]
+groups = ["doc", "test"]
 files = [
     {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"},
     {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"},
@@ -951,7 +951,7 @@ version = "1.5.3"
 description = "Lightweight pipelining with Python functions"
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "dev"]
+groups = ["main", "test"]
 files = [
     {file = "joblib-1.5.3-py3-none-any.whl", hash = "sha256:5fc3c5039fc5ca8c0276333a188bbd59d6b7ab37fe6632daa76bc7f9ec18e713"},
     {file = "joblib-1.5.3.tar.gz", hash = "sha256:8561a3269e6801106863fd0d6d84bb737be9e7631e33aaed3fb9ce5953688da3"},
@@ -963,7 +963,7 @@ version = "1.5.0"
 description = "A fast implementation of the Cassowary constraint solver"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "kiwisolver-1.5.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:32cc0a5365239a6ea0c6ed461e8838d053b57e397443c0ca894dcc8e388d4374"},
     {file = "kiwisolver-1.5.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:cc0b66c1eec9021353a4b4483afb12dfd50e3669ffbb9152d6842eb34c7e29fd"},
@@ -1090,7 +1090,7 @@ version = "1.5"
 description = "Legacy API wrapper."
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "legacy_api_wrap-1.5-py3-none-any.whl", hash = "sha256:5a8ea50e3e3bcbcdec3447b77034fd0d32cb2cf4089db799238708e4d7e0098d"},
     {file = "legacy_api_wrap-1.5.tar.gz", hash = "sha256:b41ba6532f3ebfe3a897a35a7f97dec3be04b92a450f6c2bcf89f1b91c9cadf2"},
@@ -1105,7 +1105,7 @@ version = "2.1.0"
 description = "Links recognition library with FULL unicode support."
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "linkify_it_py-2.1.0-py3-none-any.whl", hash = "sha256:0d252c1594ecba2ecedc444053db5d3a9b7ec1b0dd929c8f1d74dce89f86c05e"},
     {file = "linkify_it_py-2.1.0.tar.gz", hash = "sha256:43360231720999c10e9328dc3691160e27a718e280673d444c38d7d3aaa3b98b"},
@@ -1126,7 +1126,7 @@ version = "0.46.0"
 description = "lightweight wrapper around basic LLVM functionality"
 optional = false
 python-versions = ">=3.10"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "llvmlite-0.46.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:4323177e936d61ae0f73e653e2e614284d97d14d5dd12579adc92b6c2b0597b0"},
     {file = "llvmlite-0.46.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:0a2d461cb89537b7c20feb04c46c32e12d5ad4f0896c9dfc0f60336219ff248e"},
@@ -1176,7 +1176,7 @@ version = "4.0.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev", "doc"]
+groups = ["doc", "test"]
 files = [
     {file = "markdown_it_py-4.0.0-py3-none-any.whl", hash = "sha256:87327c59b172c5011896038353a81343b6754500a08cd7a4973bb48c6d578147"},
     {file = "markdown_it_py-4.0.0.tar.gz", hash = "sha256:cb0a2b4aa34f932c007117b194e945bd74e0ec24133ceb5bac59009cda1cb9f3"},
@@ -1201,7 +1201,7 @@ version = "3.0.3"
 description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.9"
-groups = ["dev", "doc"]
+groups = ["doc", "test"]
 files = [
     {file = "markupsafe-3.0.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2f981d352f04553a7171b8e44369f2af4055f888dfb147d55e42d29e29e74559"},
     {file = "markupsafe-3.0.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e1c1493fb6e50ab01d20a22826e57520f1284df32f2d8601fdd90b6304601419"},
@@ -1300,7 +1300,7 @@ version = "3.10.8"
 description = "Python plotting package"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "matplotlib-3.10.8-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:00270d217d6b20d14b584c521f810d60c5c78406dc289859776550df837dcda7"},
     {file = "matplotlib-3.10.8-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:37b3c1cc42aa184b3f738cfa18c1c1d72fd496d85467a6cf7b807936d39aa656"},
@@ -1379,7 +1379,7 @@ version = "0.2.1"
 description = "Inline Matplotlib backend for Jupyter"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "matplotlib_inline-0.2.1-py3-none-any.whl", hash = "sha256:d56ce5156ba6085e00a9d54fead6ed29a9c47e215cd1bba2e976ef39f5710a76"},
     {file = "matplotlib_inline-0.2.1.tar.gz", hash = "sha256:e1ee949c340d771fc39e241ea75683deb94762c8fa5f2927ec57c83c4dffa9fe"},
@@ -1397,7 +1397,7 @@ version = "0.5.0"
 description = "Collection of plugins for markdown-it-py"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev", "doc"]
+groups = ["doc", "test"]
 files = [
     {file = "mdit_py_plugins-0.5.0-py3-none-any.whl", hash = "sha256:07a08422fc1936a5d26d146759e9155ea466e842f5ab2f7d2266dd084c8dab1f"},
     {file = "mdit_py_plugins-0.5.0.tar.gz", hash = "sha256:f4918cb50119f50446560513a8e311d574ff6aaed72606ddae6d35716fe809c6"},
@@ -1417,7 +1417,7 @@ version = "0.1.2"
 description = "Markdown URL utilities"
 optional = false
 python-versions = ">=3.7"
-groups = ["dev", "doc"]
+groups = ["doc", "test"]
 files = [
     {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
     {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
@@ -1429,7 +1429,7 @@ version = "0.61.0"
 description = "A module for monitoring memory usage of a python program"
 optional = false
 python-versions = ">=3.5"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "memory_profiler-0.61.0-py3-none-any.whl", hash = "sha256:400348e61031e3942ad4d4109d18753b2fb08c2f6fb8290671c5513a34182d84"},
     {file = "memory_profiler-0.61.0.tar.gz", hash = "sha256:4e5b73d7864a1d1292fb76a03e82a3e78ef934d06828a698d9dada76da2067b0"},
@@ -1444,7 +1444,7 @@ version = "1.19.2"
 description = "A memory profiler for Python applications"
 optional = false
 python-versions = ">=3.7.0"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "memray-1.19.2-cp310-cp310-macosx_10_14_x86_64.whl", hash = "sha256:50d7130bb0c8609176b3b691c8b67fc92805180166e087549a59e7881ae8cf36"},
     {file = "memray-1.19.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:3643d601c4c1c413a62fb296598ed05dce1e1c3a58ea5c8659ae98ad36ce3a7a"},
@@ -1542,7 +1542,7 @@ version = "8.4.0"
 description = "Simple yet flexible natural sorting in Python."
 optional = false
 python-versions = ">=3.7"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "natsort-8.4.0-py3-none-any.whl", hash = "sha256:4732914fb471f56b5cce04d7bae6f164a592c7712e1c85f9ef585e197299521c"},
     {file = "natsort-8.4.0.tar.gz", hash = "sha256:45312c4a0e5507593da193dedd04abb1469253b601ecaf63445ad80f0a1ea581"},
@@ -1558,7 +1558,7 @@ version = "3.6"
 description = "Python package for creating and manipulating graphs and networks"
 optional = false
 python-versions = ">=3.11"
-groups = ["dev"]
+groups = ["test"]
 markers = "python_version >= \"3.12\""
 files = [
     {file = "networkx-3.6-py3-none-any.whl", hash = "sha256:cdb395b105806062473d3be36458d8f1459a4e4b98e236a66c3a48996e07684f"},
@@ -1582,7 +1582,7 @@ version = "3.6.1"
 description = "Python package for creating and manipulating graphs and networks"
 optional = false
 python-versions = "!=3.14.1,>=3.11"
-groups = ["dev"]
+groups = ["test"]
 markers = "python_version == \"3.11\""
 files = [
     {file = "networkx-3.6.1-py3-none-any.whl", hash = "sha256:d47fbf302e7d9cbbb9e2555a0d267983d2aa476bac30e90dfbe5669bd57f3762"},
@@ -1606,7 +1606,7 @@ version = "1.10.0"
 description = "Node.js virtual environment builder"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "nodeenv-1.10.0-py2.py3-none-any.whl", hash = "sha256:5bb13e3eed2923615535339b3c620e76779af4cb4c6a90deccc9e36b274d3827"},
     {file = "nodeenv-1.10.0.tar.gz", hash = "sha256:996c191ad80897d076bdfba80a41994c2b47c68e224c542b48feba42ba00f8bb"},
@@ -1618,7 +1618,7 @@ version = "0.64.0"
 description = "compiling Python code using LLVM"
 optional = false
 python-versions = ">=3.10"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "numba-0.64.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:cc09b79440952e3098eeebea4bf6e8d2355fb7f12734fcd9fc5039f0dca90727"},
     {file = "numba-0.64.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:1afe3a80b8c2f376b211fb7a49e536ef9eafc92436afc95a2f41ea5392f8cc65"},
@@ -1653,7 +1653,7 @@ version = "0.1.1"
 description = "Numba-accelerated Mann-Whitney U test with sparse matrix support."
 optional = false
 python-versions = ">=3.11"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "numba_mwu-0.1.1-py3-none-any.whl", hash = "sha256:994cde066cf387b7271baed307e5d9cbc2e1127c51785f3ec9e4b22fd300d7be"},
     {file = "numba_mwu-0.1.1.tar.gz", hash = "sha256:dfb74ff5d84c8923efeb1abbee56e3a4fdf3d8bdb8ce5f50a786d1ac84b3a400"},
@@ -1669,7 +1669,7 @@ version = "0.16.5"
 description = "A Python package providing buffer compression and transformation codecs for use in data storage and communication applications."
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "numcodecs-0.16.5-cp311-cp311-macosx_10_13_x86_64.whl", hash = "sha256:78382dcea50622f2ef1e6e7a71dbe7f861d8fe376b27b7c297c26907304fef1e"},
     {file = "numcodecs-0.16.5-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:e2d04a19cb57a3c519b4127ac377cca6471aee1990d7c18f5b1e3a4fe1306689"},
@@ -1714,7 +1714,7 @@ version = "2.4.3"
 description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "numpy-2.4.3-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:33b3bf58ee84b172c067f56aeadc7ee9ab6de69c5e800ab5b10295d54c581adb"},
     {file = "numpy-2.4.3-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:8ba7b51e71c05aa1f9bc3641463cd82308eab40ce0d5c7e1fd4038cbf9938147"},
@@ -1796,7 +1796,7 @@ version = "26.0"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
-groups = ["main", "dev", "doc"]
+groups = ["main", "benchmark", "doc", "test"]
 files = [
     {file = "packaging-26.0-py3-none-any.whl", hash = "sha256:b36f1fef9334a5588b4166f8bcd26a14e521f2b55e6b9de3aaa80d3ff7a37529"},
     {file = "packaging-26.0.tar.gz", hash = "sha256:00243ae351a257117b6a241061796684b084ed1c516a08c48a3f7e147a9d80b4"},
@@ -1808,7 +1808,7 @@ version = "2.3.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "pandas-2.3.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:376c6446ae31770764215a6c937f72d917f214b43560603cd60da6408f183b6c"},
     {file = "pandas-2.3.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e19d192383eab2f4ceb30b412b22ea30690c9e618f78870357ae1d682912015a"},
@@ -1907,7 +1907,7 @@ version = "0.8.6"
 description = "A Python Parser"
 optional = false
 python-versions = ">=3.6"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "parso-0.8.6-py2.py3-none-any.whl", hash = "sha256:2c549f800b70a5c4952197248825584cb00f033b29c692671d3bf08bf380baff"},
     {file = "parso-0.8.6.tar.gz", hash = "sha256:2b9a0332696df97d454fa67b81618fd69c35a7b90327cbe6ba5c92d2c68a7bfd"},
@@ -1923,7 +1923,7 @@ version = "1.0.2"
 description = "A Python package for describing statistical models and for building design matrices."
 optional = false
 python-versions = ">=3.6"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "patsy-1.0.2-py2.py3-none-any.whl", hash = "sha256:37bfddbc58fcf0362febb5f54f10743f8b21dd2aa73dec7e7ef59d1b02ae668a"},
     {file = "patsy-1.0.2.tar.gz", hash = "sha256:cdc995455f6233e90e22de72c37fcadb344e7586fb83f06696f54d92f8ce74c0"},
@@ -1937,14 +1937,14 @@ test = ["pytest", "pytest-cov", "scipy"]
 
 [[package]]
 name = "pdex"
-version = "0.2.0"
+version = "0.2.1"
 description = "Parallel differential expression for single-cell perturbation sequencing"
 optional = false
 python-versions = ">=3.11"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
-    {file = "pdex-0.2.0-py3-none-any.whl", hash = "sha256:10dc5e4e093a5c7bd5a63fa1d601f1cb6ddb2796b6d7d5f0e557b47e1d94439e"},
-    {file = "pdex-0.2.0.tar.gz", hash = "sha256:711e89483f892d1f3008daaca01fdc15aa81b5f5438b3efb09e080ce4e0adb60"},
+    {file = "pdex-0.2.1-py3-none-any.whl", hash = "sha256:f2c891288d30ef304ec1bf266577ef6ac3dc1e5ae122240b5f49ee9902514b8f"},
+    {file = "pdex-0.2.1.tar.gz", hash = "sha256:fc6778ee71c5cbf871679a38a98980442433b6581ce114dec86d61145496504f"},
 ]
 
 [package.dependencies]
@@ -1964,7 +1964,7 @@ version = "4.9.0"
 description = "Pexpect allows easy control of interactive console applications."
 optional = false
 python-versions = "*"
-groups = ["dev"]
+groups = ["test"]
 markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\""
 files = [
     {file = "pexpect-4.9.0-py2.py3-none-any.whl", hash = "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523"},
@@ -1980,7 +1980,7 @@ version = "12.1.1"
 description = "Python Imaging Library (fork)"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "pillow-12.1.1-cp310-cp310-macosx_10_10_x86_64.whl", hash = "sha256:1f1625b72740fdda5d77b4def688eb8fd6490975d06b909fd19f13f391e077e0"},
     {file = "pillow-12.1.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:178aa072084bd88ec759052feca8e56cbb14a60b39322b99a049e58090479713"},
@@ -2089,7 +2089,7 @@ version = "4.9.4"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "platformdirs-4.9.4-py3-none-any.whl", hash = "sha256:68a9a4619a666ea6439f2ff250c12a853cd1cbd5158d258bd824a7df6be2f868"},
     {file = "platformdirs-4.9.4.tar.gz", hash = "sha256:1ec356301b7dc906d83f371c8f487070e99d3ccf9e501686456394622a01a934"},
@@ -2101,7 +2101,7 @@ version = "1.6.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["benchmark", "test"]
 files = [
     {file = "pluggy-1.6.0-py3-none-any.whl", hash = "sha256:e920276dd6813095e9377c0bc5566d94c932c33b27a3e3945d8389c374dd4746"},
     {file = "pluggy-1.6.0.tar.gz", hash = "sha256:7dcc130b76258d33b90f61b658791dede3486c3e6bfb003ee5c9bfb396dd22f3"},
@@ -2113,18 +2113,18 @@ testing = ["coverage", "pytest", "pytest-benchmark"]
 
 [[package]]
 name = "polars"
-version = "1.39.0"
+version = "1.39.3"
 description = "Blazingly fast DataFrame library"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
-    {file = "polars-1.39.0-py3-none-any.whl", hash = "sha256:4d1198b41bc47561673d9f54d0f595125202a3f53e3502821802958d3e60efe9"},
-    {file = "polars-1.39.0.tar.gz", hash = "sha256:e63a25fb7682ae660e36067915a7c71a653b17f82308a8eb67a190a80daf0710"},
+    {file = "polars-1.39.3-py3-none-any.whl", hash = "sha256:c2b955ccc0a08a2bc9259785decf3d5c007b489b523bf2390cf21cec2bb82a56"},
+    {file = "polars-1.39.3.tar.gz", hash = "sha256:2e016c7f3e8d14fa777ef86fe0477cec6c67023a20ba4c94d6e8431eefe4a63c"},
 ]
 
 [package.dependencies]
-polars-runtime-32 = "1.39.0"
+polars-runtime-32 = "1.39.3"
 
 [package.extras]
 adbc = ["adbc-driver-manager[dbapi]", "adbc-driver-sqlite[dbapi]"]
@@ -2147,8 +2147,8 @@ plot = ["altair (>=5.4.0)"]
 polars-cloud = ["polars_cloud (>=0.4.0)"]
 pyarrow = ["pyarrow (>=7.0.0)"]
 pydantic = ["pydantic"]
-rt64 = ["polars-runtime-64 (==1.39.0)"]
-rtcompat = ["polars-runtime-compat (==1.39.0)"]
+rt64 = ["polars-runtime-64 (==1.39.3)"]
+rtcompat = ["polars-runtime-compat (==1.39.3)"]
 sqlalchemy = ["polars[pandas]", "sqlalchemy"]
 style = ["great-tables (>=0.8.0)"]
 timezone = ["tzdata ; platform_system == \"Windows\""]
@@ -2157,21 +2157,21 @@ xlsxwriter = ["xlsxwriter"]
 
 [[package]]
 name = "polars-runtime-32"
-version = "1.39.0"
+version = "1.39.3"
 description = "Blazingly fast DataFrame library"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
-    {file = "polars_runtime_32-1.39.0-cp310-abi3-macosx_10_12_x86_64.whl", hash = "sha256:4a4bc06ca97238d963979e3f888fbb500ee607f03cefe43a9062381e259503e2"},
-    {file = "polars_runtime_32-1.39.0-cp310-abi3-macosx_11_0_arm64.whl", hash = "sha256:e9914b9e168634bc21d07ee03b8fa92d0aaa8ac7b2bb1c9e2f1f78622aa1b8f4"},
-    {file = "polars_runtime_32-1.39.0-cp310-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:8ded58f1c28e17ecbff8625cb1ad93016761260348acb79b1a4cd077970e89e5"},
-    {file = "polars_runtime_32-1.39.0-cp310-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b82c872b25ef6628462f90f1b6b3950779aee36889e83b3693d0a69684d3d86a"},
-    {file = "polars_runtime_32-1.39.0-cp310-abi3-musllinux_1_2_aarch64.whl", hash = "sha256:4a0e9d6b56362f3ba1a33d0538ae14c9b9a8e0fb835f86abfc82fa7b2c7d89c9"},
-    {file = "polars_runtime_32-1.39.0-cp310-abi3-musllinux_1_2_x86_64.whl", hash = "sha256:0daea3919661ba672b00bd01b5547cd29bb6414732457abb72cbc75103cf3c90"},
-    {file = "polars_runtime_32-1.39.0-cp310-abi3-win_amd64.whl", hash = "sha256:d6e9d1cf264aacfe5bf03241c04ef435d0f9cfec3fbe079acc3a7328a737961a"},
-    {file = "polars_runtime_32-1.39.0-cp310-abi3-win_arm64.whl", hash = "sha256:d69abde5f148566860bbe910010847bd7791e72f7c8063a4d2c462246a33a72a"},
-    {file = "polars_runtime_32-1.39.0.tar.gz", hash = "sha256:f5aabed8c7318fcad5173e83bee385445f54b5f8c83b1ec9eab78bdffa293141"},
+    {file = "polars_runtime_32-1.39.3-cp310-abi3-macosx_10_12_x86_64.whl", hash = "sha256:425c0b220b573fa097b4042edff73114cc6d23432a21dfd2dc41adf329d7d2e9"},
+    {file = "polars_runtime_32-1.39.3-cp310-abi3-macosx_11_0_arm64.whl", hash = "sha256:ef5884711e3c617d7dc93519a7d038e242f5741cfe5fe9afd32d58845d86c562"},
+    {file = "polars_runtime_32-1.39.3-cp310-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:06b47f535eb1f97a9a1e5b0053ef50db3a4276e241178e37bbb1a38b1fa53b14"},
+    {file = "polars_runtime_32-1.39.3-cp310-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8bc9e13dc1d2e828331f2fe8ccbc9757554dc4933a8d3e85e906b988178f95ed"},
+    {file = "polars_runtime_32-1.39.3-cp310-abi3-musllinux_1_2_aarch64.whl", hash = "sha256:363d49e3a3e638fc943e2b9887940300a7d06789930855a178a4727949259dc2"},
+    {file = "polars_runtime_32-1.39.3-cp310-abi3-musllinux_1_2_x86_64.whl", hash = "sha256:7c206bdcc7bc62ea038d6adea8e44b02f0e675e0191a54c810703b4895208ea4"},
+    {file = "polars_runtime_32-1.39.3-cp310-abi3-win_amd64.whl", hash = "sha256:d66ca522517554a883446957539c40dc7b75eb0c2220357fb28bc8940d305339"},
+    {file = "polars_runtime_32-1.39.3-cp310-abi3-win_arm64.whl", hash = "sha256:f49f51461de63f13e5dd4eb080421c8f23f856945f3f8bd5b2b1f59da52c2860"},
+    {file = "polars_runtime_32-1.39.3.tar.gz", hash = "sha256:c728e4f469cafab501947585f36311b8fb222d3e934c6209e83791e0df20b29d"},
 ]
 
 [[package]]
@@ -2180,7 +2180,7 @@ version = "4.5.1"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "pre_commit-4.5.1-py2.py3-none-any.whl", hash = "sha256:3b3afd891e97337708c1674210f8eba659b52a38ea5f822ff142d10786221f77"},
     {file = "pre_commit-4.5.1.tar.gz", hash = "sha256:eb545fcff725875197837263e977ea257a402056661f09dae08e4b149b030a61"},
@@ -2199,7 +2199,7 @@ version = "3.0.52"
 description = "Library for building powerful interactive command lines in Python"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "prompt_toolkit-3.0.52-py3-none-any.whl", hash = "sha256:9aac639a3bbd33284347de5ad8d68ecc044b91a762dc39b7c21095fcd6a19955"},
     {file = "prompt_toolkit-3.0.52.tar.gz", hash = "sha256:28cde192929c8e7321de85de1ddbe736f1375148b02f2e17edd840042b1be855"},
@@ -2214,7 +2214,7 @@ version = "7.2.2"
 description = "Cross-platform lib for process and system monitoring."
 optional = false
 python-versions = ">=3.6"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "psutil-7.2.2-cp313-cp313t-macosx_10_13_x86_64.whl", hash = "sha256:2edccc433cbfa046b980b0df0171cd25bcaeb3a68fe9022db0979e7aa74a826b"},
     {file = "psutil-7.2.2-cp313-cp313t-macosx_11_0_arm64.whl", hash = "sha256:e78c8603dcd9a04c7364f1a3e670cea95d51ee865e4efb3556a3a63adef958ea"},
@@ -2249,7 +2249,7 @@ version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
 optional = false
 python-versions = "*"
-groups = ["dev"]
+groups = ["test"]
 markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\""
 files = [
     {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"},
@@ -2262,7 +2262,7 @@ version = "0.2.3"
 description = "Safely evaluate AST nodes without side effects"
 optional = false
 python-versions = "*"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "pure_eval-0.2.3-py3-none-any.whl", hash = "sha256:1db8e35b67b3d218d818ae653e27f06c3aa420901fa7b081ca98cbedc874e0d0"},
     {file = "pure_eval-0.2.3.tar.gz", hash = "sha256:5f4e983f40564c576c7c8635ae88db5956bb2229d7e9237d03b3c0b0190eaf42"},
@@ -2277,7 +2277,7 @@ version = "9.0.0"
 description = "Get CPU info with pure Python"
 optional = false
 python-versions = "*"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "py-cpuinfo-9.0.0.tar.gz", hash = "sha256:3cdbbf3fac90dc6f118bfd64384f309edeadd902d7c8fb17f02ffa1fc3f49690"},
     {file = "py_cpuinfo-9.0.0-py3-none-any.whl", hash = "sha256:859625bc251f64e21f077d099d4162689c762b5d6a4c3c97553d56241c9674d5"},
@@ -2289,7 +2289,7 @@ version = "23.0.1"
 description = "Python library for Apache Arrow"
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "pyarrow-23.0.1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:3fab8f82571844eb3c460f90a75583801d14ca0cc32b1acc8c361650e006fd56"},
     {file = "pyarrow-23.0.1-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:3f91c038b95f71ddfc865f11d5876c42f343b4495535bd262c7b321b0b94507c"},
@@ -2349,7 +2349,7 @@ version = "3.1.0"
 description = "A Python svg graph plotting library"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "pygal-3.1.0-py3-none-any.whl", hash = "sha256:4e923490f3490c90c481f4535fa3adcda20ff374257ab9d8ae897f91b632c0bb"},
     {file = "pygal-3.1.0.tar.gz", hash = "sha256:fbdee7351a7423e7907fb8a9c3b77305f6b5678cb2e6fd0db36a8825e42955ec"},
@@ -2371,7 +2371,7 @@ version = "1.0.2"
 description = "Python package providing assets from https://github.com/Kozea/pygal.js"
 optional = false
 python-versions = "*"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "pygaljs-1.0.2-py2.py3-none-any.whl", hash = "sha256:d75e18cb21cc2cda40c45c3ee690771e5e3d4652bf57206f20137cf475c0dbe8"},
     {file = "pygaljs-1.0.2.tar.gz", hash = "sha256:0b71ee32495dcba5fbb4a0476ddbba07658ad65f5675e4ad409baf154dec5111"},
@@ -2383,7 +2383,7 @@ version = "2.19.2"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.8"
-groups = ["dev", "doc"]
+groups = ["benchmark", "doc", "test"]
 files = [
     {file = "pygments-2.19.2-py3-none-any.whl", hash = "sha256:86540386c03d588bb81d44bc3928634ff26449851e99741617ecb9037ee5ec0b"},
     {file = "pygments-2.19.2.tar.gz", hash = "sha256:636cb2477cec7f8952536970bc533bc43743542f70392ae026374600add5b887"},
@@ -2398,7 +2398,7 @@ version = "0.6.0"
 description = "Nearest Neighbor Descent"
 optional = false
 python-versions = "*"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "pynndescent-0.6.0-py3-none-any.whl", hash = "sha256:dc8c74844e4c7f5cbd1e0cd6909da86fdc789e6ff4997336e344779c3d5538ef"},
     {file = "pynndescent-0.6.0.tar.gz", hash = "sha256:7ffde0fb5b400741e055a9f7d377e3702e02250616834231f6c209e39aac24f5"},
@@ -2420,7 +2420,7 @@ version = "3.3.2"
 description = "pyparsing - Classes and methods to define and execute parsing grammars"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "pyparsing-3.3.2-py3-none-any.whl", hash = "sha256:850ba148bd908d7e2411587e247a1e4f0327839c40e2e5e6d05a007ecc69911d"},
     {file = "pyparsing-3.3.2.tar.gz", hash = "sha256:c777f4d763f140633dcb6d8a3eda953bf7a214dc4eff598413c070bcdc117cbc"},
@@ -2435,7 +2435,7 @@ version = "8.4.2"
 description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["benchmark", "test"]
 files = [
     {file = "pytest-8.4.2-py3-none-any.whl", hash = "sha256:872f880de3fc3a5bdc88a11b39c9710c3497a547cfa9320bc3c5e62fbf272e79"},
     {file = "pytest-8.4.2.tar.gz", hash = "sha256:86c0d0b93306b961d58d62a4db4879f27fe25513d4b969df351abdddb3c30e01"},
@@ -2457,7 +2457,7 @@ version = "5.2.3"
 description = "A ``pytest`` fixture for benchmarking code. It will group the tests into rounds that are calibrated to the chosen timer."
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "pytest_benchmark-5.2.3-py3-none-any.whl", hash = "sha256:bc839726ad20e99aaa0d11a127445457b4219bdb9e80a1afc4b51da7f96b0803"},
     {file = "pytest_benchmark-5.2.3.tar.gz", hash = "sha256:deb7317998a23c650fd4ff76e1230066a76cb45dcece0aca5607143c619e7779"},
@@ -2481,7 +2481,7 @@ version = "1.8.0"
 description = "A simple plugin to use with pytest"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "pytest_memray-1.8.0-py3-none-any.whl", hash = "sha256:44da9fe0d98541abf4cc76acea6e4a9c525b3c8e604655e5537705f336c9b875"},
     {file = "pytest_memray-1.8.0.tar.gz", hash = "sha256:c0c706ef81941a7aa7064f2b3b8b5cdc0cea72b5277c6a6a09b113ca9ab30bdb"},
@@ -2502,7 +2502,7 @@ version = "0.2.0"
 description = "Select pytest tests with regular expressions"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "pytest-regex-0.2.0.tar.gz", hash = "sha256:f4076c49abece2503815c8b2e282a8fd22d330f06f9bf91d620b3ef02de7a353"},
     {file = "pytest_regex-0.2.0-py3-none-any.whl", hash = "sha256:c97e9c49e8c7e7482bd1fa701e3a5cccd18eb78d263752e32dba4937d8cee6d9"},
@@ -2517,7 +2517,7 @@ version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
     {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"},
@@ -2532,7 +2532,7 @@ version = "1.1.3"
 description = "Python interpreter discovery"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "python_discovery-1.1.3-py3-none-any.whl", hash = "sha256:90e795f0121bc84572e737c9aa9966311b9fde44ffb88a5953b3ec9b31c6945e"},
     {file = "python_discovery-1.1.3.tar.gz", hash = "sha256:7acca36e818cd88e9b2ba03e045ad7e93e1713e29c6bbfba5d90202310b7baa5"},
@@ -2552,7 +2552,7 @@ version = "2026.1.post1"
 description = "World timezone definitions, modern and historical"
 optional = false
 python-versions = "*"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "pytz-2026.1.post1-py2.py3-none-any.whl", hash = "sha256:f2fd16142fda348286a75e1a524be810bb05d444e5a081f37f7affc635035f7a"},
     {file = "pytz-2026.1.post1.tar.gz", hash = "sha256:3378dde6a0c3d26719182142c56e60c7f9af7e968076f31aae569d72a0358ee1"},
@@ -2564,7 +2564,7 @@ version = "6.0.3"
 description = "YAML parser and emitter for Python"
 optional = false
 python-versions = ">=3.8"
-groups = ["main", "dev", "doc"]
+groups = ["main", "benchmark", "doc", "test"]
 files = [
     {file = "PyYAML-6.0.3-cp38-cp38-macosx_10_13_x86_64.whl", hash = "sha256:c2514fceb77bc5e7a2f7adfaa1feb2fb311607c9cb518dbc378688ec73d8292f"},
     {file = "PyYAML-6.0.3-cp38-cp38-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:9c57bb8c96f6d1808c030b1687b9b5fb476abaa47f0db9c0101f5e9f394e97f4"},
@@ -2669,7 +2669,7 @@ version = "14.3.3"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 optional = false
 python-versions = ">=3.8.0"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "rich-14.3.3-py3-none-any.whl", hash = "sha256:793431c1f8619afa7d3b52b2cdec859562b950ea0d4b6b505397612db8d5362d"},
     {file = "rich-14.3.3.tar.gz", hash = "sha256:b8daa0b9e4eef54dd8cf7c86c03713f53241884e814f4e2f5fb342fe520f639b"},
@@ -2700,7 +2700,7 @@ version = "1.11.5"
 description = "Single-Cell Analysis in Python."
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 markers = "python_version == \"3.11\""
 files = [
     {file = "scanpy-1.11.5-py3-none-any.whl", hash = "sha256:fcd383ddcf7acbf7c0ca232c25ad51b00aec9f8d2f7c8954b8c6ee0962257166"},
@@ -2754,7 +2754,7 @@ version = "1.12"
 description = "Single-Cell Analysis in Python."
 optional = false
 python-versions = ">=3.12"
-groups = ["dev"]
+groups = ["test"]
 markers = "python_version >= \"3.12\""
 files = [
     {file = "scanpy-1.12-py3-none-any.whl", hash = "sha256:0b89827f9ba9fea8fce5a49b311e9ce34a23f922b7d8506fa845a2dc92ef0bfe"},
@@ -2806,7 +2806,7 @@ version = "1.8.0"
 description = "A set of python modules for machine learning and data mining"
 optional = false
 python-versions = ">=3.11"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "scikit_learn-1.8.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:146b4d36f800c013d267b29168813f7a03a43ecd2895d04861f1240b564421da"},
     {file = "scikit_learn-1.8.0-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:f984ca4b14914e6b4094c5d52a32ea16b49832c03bd17a110f004db3c223e8e1"},
@@ -2868,7 +2868,7 @@ version = "1.17.1"
 description = "Fundamental algorithms for scientific computing in Python"
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "scipy-1.17.1-cp311-cp311-macosx_10_14_x86_64.whl", hash = "sha256:1f95b894f13729334fb990162e911c9e5dc1ab390c58aa6cbecb389c5b5e28ec"},
     {file = "scipy-1.17.1-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:e18f12c6b0bc5a592ed23d3f7b891f68fd7f8241d69b7883769eb5d5dfb52696"},
@@ -2947,7 +2947,7 @@ version = "0.13.2"
 description = "Statistical data visualization"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "seaborn-0.13.2-py3-none-any.whl", hash = "sha256:636f8336facf092165e27924f223d3c62ca560b1f2bb5dff7ab7fad265361987"},
     {file = "seaborn-0.13.2.tar.gz", hash = "sha256:93e60a40988f4d65e9f4885df477e2fdaff6b73a9ded434c1ab356dd57eefff7"},
@@ -2969,7 +2969,7 @@ version = "0.4"
 description = "Print versions of imported packages."
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "session_info2-0.4-py3-none-any.whl", hash = "sha256:1c06604853acd43d8cdcc9e815efbdf5534d728234e8374dea1eef29496bb1df"},
     {file = "session_info2-0.4.tar.gz", hash = "sha256:bb01bf7c320301d6cbcfad36b85cca7befe537ffd60269be38ae9e1a956f4aa4"},
@@ -2987,7 +2987,7 @@ version = "82.0.1"
 description = "Most extensible Python build backend with support for C/C++ extension modules"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "setuptools-82.0.1-py3-none-any.whl", hash = "sha256:a59e362652f08dcd477c78bb6e7bd9d80a7995bc73ce773050228a348ce2e5bb"},
     {file = "setuptools-82.0.1.tar.gz", hash = "sha256:7d872682c5d01cfde07da7bccc7b65469d3dca203318515ada1de5eda35efbf9"},
@@ -3008,7 +3008,7 @@ version = "1.17.0"
 description = "Python 2 and 3 compatibility utilities"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"},
     {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"},
@@ -3226,7 +3226,7 @@ version = "0.6.3"
 description = "Extract data from python stack frames and tracebacks for informative displays"
 optional = false
 python-versions = "*"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"},
     {file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"},
@@ -3246,7 +3246,7 @@ version = "0.14.6"
 description = "Statistical computations and models for Python"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "statsmodels-0.14.6-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:f4ff0649a2df674c7ffb6fa1a06bffdb82a6adf09a48e90e000a15a6aaa734b0"},
     {file = "statsmodels-0.14.6-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:109012088b3e370080846ab053c76d125268631410142daad2f8c10770e8e8d9"},
@@ -3304,7 +3304,7 @@ version = "8.1.1"
 description = "Modern Text User Interface framework"
 optional = false
 python-versions = "<4.0,>=3.9"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "textual-8.1.1-py3-none-any.whl", hash = "sha256:6712f96e335cd782e76193dee16b9c8875fe0699d923bc8d3f1228fd23e773a6"},
     {file = "textual-8.1.1.tar.gz", hash = "sha256:eef0256a6131f06a20ad7576412138c1f30f92ddeedd055953c08d97044bc317"},
@@ -3327,7 +3327,7 @@ version = "3.6.0"
 description = "threadpoolctl"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "threadpoolctl-3.6.0-py3-none-any.whl", hash = "sha256:43a0b8fd5a2928500110039e43a5eed8480b918967083ea48dc3ab9f13c4a7fb"},
     {file = "threadpoolctl-3.6.0.tar.gz", hash = "sha256:8ab8b4aa3491d812b623328249fab5302a68d2d71745c8a4c719a2fcaba9f44e"},
@@ -3339,7 +3339,7 @@ version = "2.4.1"
 description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "tomli-2.4.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:f8f0fc26ec2cc2b965b7a3b87cd19c5c6b8c5e5f436b984e85f486d652285c30"},
     {file = "tomli-2.4.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:4ab97e64ccda8756376892c53a72bd1f964e519c77236368527f758fbc36a53a"},
@@ -3396,7 +3396,7 @@ version = "4.67.3"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "tqdm-4.67.3-py3-none-any.whl", hash = "sha256:ee1e4c0e59148062281c49d80b25b67771a127c85fc9676d3be5f243206826bf"},
     {file = "tqdm-4.67.3.tar.gz", hash = "sha256:7d825f03f89244ef73f1d4ce193cb1774a8179fd96f31d7e1dcde62092b960bb"},
@@ -3418,7 +3418,7 @@ version = "5.14.3"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"},
     {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"},
@@ -3434,7 +3434,7 @@ version = "4.15.0"
 description = "Backported and Experimental Type Hints for Python 3.9+"
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "dev", "doc"]
+groups = ["main", "benchmark", "doc", "test"]
 files = [
     {file = "typing_extensions-4.15.0-py3-none-any.whl", hash = "sha256:f0fa19c6845758ab08074a0cfa8b7aecb71c999ca73d62883bc25cc018c4e548"},
     {file = "typing_extensions-4.15.0.tar.gz", hash = "sha256:0cea48d173cc12fa28ecabc3b837ea3cf6f38c6d1136f85cbaaf598984861466"},
@@ -3446,7 +3446,7 @@ version = "2025.3"
 description = "Provider of IANA time zone data"
 optional = false
 python-versions = ">=2"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "tzdata-2025.3-py2.py3-none-any.whl", hash = "sha256:06a47e5700f3081aab02b2e513160914ff0694bce9947d6b76ebd6bf57cfc5d1"},
     {file = "tzdata-2025.3.tar.gz", hash = "sha256:de39c2ca5dc7b0344f2eba86f49d614019d29f060fc4ebc8a417896a620b56a7"},
@@ -3458,7 +3458,7 @@ version = "2.0.0"
 description = "Micro subset of unicode data files for linkify-it-py projects."
 optional = false
 python-versions = ">=3.10"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "uc_micro_py-2.0.0-py3-none-any.whl", hash = "sha256:3603a3859af53e5a39bc7677713c78ea6589ff188d70f4fee165db88e22b242c"},
     {file = "uc_micro_py-2.0.0.tar.gz", hash = "sha256:c53691e495c8db60e16ffc4861a35469b0ba0821fe409a8a7a0a71864d33a811"},
@@ -3473,7 +3473,7 @@ version = "0.5.11"
 description = "Uniform Manifold Approximation and Projection"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "umap_learn-0.5.11-py3-none-any.whl", hash = "sha256:cb17adbde9d544ba79481b3ab4d81ac222e940f3d9219307bea6044f869af3cc"},
     {file = "umap_learn-0.5.11.tar.gz", hash = "sha256:31566ffd495fbf05d7ab3efcba703861c0f5e6fc6998a838d0e2becdd00e54f5"},
@@ -3517,7 +3517,7 @@ version = "21.2.0"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "virtualenv-21.2.0-py3-none-any.whl", hash = "sha256:1bd755b504931164a5a496d217c014d098426cddc79363ad66ac78125f9d908f"},
     {file = "virtualenv-21.2.0.tar.gz", hash = "sha256:1720dc3a62ef5b443092e3f499228599045d7fea4c79199770499df8becf9098"},
@@ -3535,7 +3535,7 @@ version = "0.6.0"
 description = "Measures the displayed width of unicode strings in a terminal"
 optional = false
 python-versions = ">=3.8"
-groups = ["dev"]
+groups = ["test"]
 files = [
     {file = "wcwidth-0.6.0-py3-none-any.whl", hash = "sha256:1a3a1e510b553315f8e146c54764f4fb6264ffad731b3d78088cdb1478ffbdad"},
     {file = "wcwidth-0.6.0.tar.gz", hash = "sha256:cdc4e4262d6ef9a1a57e018384cbeb1208d8abbc64176027e2c2455c81313159"},
@@ -3563,7 +3563,7 @@ version = "3.1.5"
 description = "An implementation of chunked, compressed, N-dimensional arrays for Python"
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "dev"]
+groups = ["main", "benchmark", "test"]
 files = [
     {file = "zarr-3.1.5-py3-none-any.whl", hash = "sha256:29cd905afb6235b94c09decda4258c888fcb79bb6c862ef7c0b8fe009b5c8563"},
     {file = "zarr-3.1.5.tar.gz", hash = "sha256:fbe0c79675a40c996de7ca08e80a1c0a20537bd4a9f43418b6d101395c0bba2b"},
@@ -3592,7 +3592,7 @@ version = "3.23.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.9"
-groups = ["dev"]
+groups = ["benchmark"]
 files = [
     {file = "zipp-3.23.0-py3-none-any.whl", hash = "sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e"},
     {file = "zipp-3.23.0.tar.gz", hash = "sha256:a07157588a12518c9d4034df3fbbee09c814741a33ff63c05fa29d26a2404166"},
@@ -3609,4 +3609,4 @@ type = ["pytest-mypy"]
 [metadata]
 lock-version = "2.1"
 python-versions = ">=3.11,<4.0"
-content-hash = "5e509c80c9dbcc5d4253f92d6087ce3c2c5f9285e7a8847e2d2918cc772c6757"
+content-hash = "45f0aa2be672b1964b4e1d6384f22180e7f29224f381e38cdc148583f7789a2d"
diff --git a/pyproject.toml b/pyproject.toml
index 4955e3b..2819535 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -30,18 +30,21 @@ features = ["pyo3/extension-module"]
 module-name = "illico.rust_backend"
 
 [dependency-groups]
-dev = [
+test = [
     "pytest (>=8.4.2,<9.0.0)",
-    "pytest-benchmark (>=5.1.0,<6.0.0)",
-    "pytest-benchmark[histogram] (>=5.2.3,<6.0.0)",
     "pre-commit (>=4.3.0,<5.0.0)",
     "scanpy (>=1.11.5,<2.0.0)",
-    "pytest-memray (>=1.8.0,<2.0.0)",
     "memory-profiler (>=0.61.0,<0.62.0)",
     "pytest-regex (>=0.2.0,<0.3.0)",
-    "memray (>=1.19.1,<2.0.0)",
     "ipdb (>=0.13.13,<0.14.0)",
     "tomli (>=2.4.1,<3.0.0)",
+    "memray (>=1.19.1,<2.0.0)",
+    "pytest-memray (>=1.8.0,<2.0.0)",
+]
+benchmark = [
+    "pdex (>=0.2.0)",
+    "pytest-benchmark (>=5.1.0,<6.0.0)",
+    "pytest-benchmark[histogram] (>=5.2.3,<6.0.0)",
 ]
 doc = [
     "Sphinx>=5.0",
diff --git a/tests/test_asymptotic_wilcoxon.py b/tests/test_asymptotic_wilcoxon.py
index 92d3615..f09a4e1 100644
--- a/tests/test_asymptotic_wilcoxon.py
+++ b/tests/test_asymptotic_wilcoxon.py
@@ -13,7 +13,6 @@
 import pytest
 import scanpy as sc
 from numba import set_num_threads
-from pdex import pdex
 from scipy import sparse as py_sparse
 from scipy.stats import mannwhitneyu
 
@@ -402,6 +401,7 @@ def run():
         with warnings.catch_warnings():
             warnings.simplefilter("ignore")
             if method == "pdex":
+                import pdex
                 mode = "ref" if test == "ovo" else "all"
                 pdex(
                     data,

From 24c6f613caba759bdcec577902616f8e24af6233 Mon Sep 17 00:00:00 2001
From: ilan-gold <ilanbassgold@gmail.com>
Date: Mon, 20 Apr 2026 11:34:27 +0200
Subject: [PATCH 4/6] fix: lock poetry file

---
 poetry.lock    | 206 ++++++++++++++++++++++++-------------------------
 pyproject.toml |  14 ++--
 2 files changed, 109 insertions(+), 111 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index f9b5694..95cee57 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -37,7 +37,7 @@ version = "0.12.10"
 description = "Annotated data."
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "anndata-0.12.10-py3-none-any.whl", hash = "sha256:e3d940d8e34373dc250f998c1011c1da52721f980de9d83a0599daa2baa286e5"},
     {file = "anndata-0.12.10.tar.gz", hash = "sha256:73a73c99ca50400eb9dc7f2fdd400cf677ea4bb9ef1f7c04691c0fc557e43d7f"},
@@ -72,7 +72,7 @@ version = "1.14.0"
 description = "A wrapper around NumPy and other array libraries to make them compatible with the Array API standard"
 optional = false
 python-versions = ">=3.10"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "array_api_compat-1.14.0-py3-none-any.whl", hash = "sha256:ed5af1f9b6595a199c942505f281ec994892556b6efc24679a0501e87a7d6279"},
     {file = "array_api_compat-1.14.0.tar.gz", hash = "sha256:c819ba707f5c507800cb545f7e6348ff1ecc46538381d9ad9b371ffc9cd6d784"},
@@ -95,7 +95,7 @@ version = "3.0.1"
 description = "Annotate AST trees with source code positions"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "asttokens-3.0.1-py3-none-any.whl", hash = "sha256:15a3ebc0f43c2d0a50eeafea25e19046c68398e487b9f1f5b517f7c0f40f976a"},
     {file = "asttokens-3.0.1.tar.gz", hash = "sha256:71a4ee5de0bde6a31d64f6b13f2293ac190344478f081c3d1bccfcf5eacb0cb7"},
@@ -161,7 +161,7 @@ version = "3.5.0"
 description = "Validate configuration and produce human readable error messages."
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "cfgv-3.5.0-py2.py3-none-any.whl", hash = "sha256:a8dc6b26ad22ff227d2634a65cb388215ce6cc96bbcc5cfde7641ae87e8dacc0"},
     {file = "cfgv-3.5.0.tar.gz", hash = "sha256:d5b1034354820651caa73ede66a6294d6e95c1b00acc5e9b098e917404669132"},
@@ -296,12 +296,12 @@ version = "0.4.6"
 description = "Cross-platform colored terminal text."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
-groups = ["main", "benchmark", "doc", "test"]
+groups = ["main", "dev", "doc"]
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
-markers = {main = "platform_system == \"Windows\" or sys_platform == \"win32\"", benchmark = "platform_system == \"Windows\" or sys_platform == \"win32\"", doc = "sys_platform == \"win32\"", test = "platform_system == \"Windows\" or sys_platform == \"win32\""}
+markers = {main = "platform_system == \"Windows\" or sys_platform == \"win32\"", dev = "platform_system == \"Windows\" or sys_platform == \"win32\"", doc = "sys_platform == \"win32\""}
 
 [[package]]
 name = "contourpy"
@@ -309,7 +309,7 @@ version = "1.3.3"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
 python-versions = ">=3.11"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "contourpy-1.3.3-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:709a48ef9a690e1343202916450bc48b9e51c049b089c7f79a267b46cffcdaa1"},
     {file = "contourpy-1.3.3-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:23416f38bfd74d5d28ab8429cc4d63fa67d5068bd711a85edb1c3fb0c3e2f381"},
@@ -401,7 +401,7 @@ version = "0.12.1"
 description = "Composable style cycles"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "cycler-0.12.1-py3-none-any.whl", hash = "sha256:85cef7cff222d8644161529808465972e51340599459b8ac3ccbac5a854e0d30"},
     {file = "cycler-0.12.1.tar.gz", hash = "sha256:88bb128f02ba341da8ef447245a9e138fae777f6a23943da4540077d3601eb1c"},
@@ -417,7 +417,7 @@ version = "5.2.1"
 description = "Decorators for Humans"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "decorator-5.2.1-py3-none-any.whl", hash = "sha256:d316bb415a2d9e2d2b3abcc4084c6502fc09240e292cd76a76afc106a1c8e04a"},
     {file = "decorator-5.2.1.tar.gz", hash = "sha256:65f266143752f734b0a7cc83c46f4618af75b8c5911b00ccb61d0ac9b6da0360"},
@@ -429,7 +429,7 @@ version = "0.4.0"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "distlib-0.4.0-py2.py3-none-any.whl", hash = "sha256:9659f7d87e46584a30b5780e43ac7a2143098441670ff0a49d5f9034c54a6c16"},
     {file = "distlib-0.4.0.tar.gz", hash = "sha256:feec40075be03a04501a973d81f633735b4b69f98b05450592310c0f401a4e0d"},
@@ -453,7 +453,7 @@ version = "0.8.1.post1"
 description = "Python package for configuring a python package"
 optional = false
 python-versions = ">=3.8"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "donfig-0.8.1.post1-py3-none-any.whl", hash = "sha256:2a3175ce74a06109ff9307d90a230f81215cbac9a751f4d1c6194644b8204f9d"},
     {file = "donfig-0.8.1.post1.tar.gz", hash = "sha256:3bef3413a4c1c601b585e8d297256d0c1470ea012afa6e8461dc28bfb7c23f52"},
@@ -472,7 +472,7 @@ version = "2.2.1"
 description = "Get the currently executing AST node of a frame, and other information"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "executing-2.2.1-py2.py3-none-any.whl", hash = "sha256:760643d3452b4d777d295bb167ccc74c64a81df23fb5e08eff250c425a4b2017"},
     {file = "executing-2.2.1.tar.gz", hash = "sha256:3632cc370565f6648cc328b32435bd120a1e4ebb20c77e3fdde9a13cd1e533c4"},
@@ -487,7 +487,7 @@ version = "1.3.1"
 description = "Fast array utilities with minimal dependencies."
 optional = false
 python-versions = ">=3.11"
-groups = ["test"]
+groups = ["dev"]
 markers = "python_version >= \"3.12\""
 files = [
     {file = "fast_array_utils-1.3.1-py3-none-any.whl", hash = "sha256:7617322b29c9f3a8e4c046355ecf653bbee581245787243ea06212a1a56fa611"},
@@ -515,7 +515,7 @@ version = "3.25.2"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "filelock-3.25.2-py3-none-any.whl", hash = "sha256:ca8afb0da15f229774c9ad1b455ed96e85a81373065fb10446672f64444ddf70"},
     {file = "filelock-3.25.2.tar.gz", hash = "sha256:b64ece2b38f4ca29dd3e810287aa8c48182bbecd1ae6e9ae126c9b35f1382694"},
@@ -527,7 +527,7 @@ version = "4.62.1"
 description = "Tools to manipulate font files"
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "fonttools-4.62.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:ad5cca75776cd453b1b035b530e943334957ae152a36a88a320e779d61fc980c"},
     {file = "fonttools-4.62.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0b3ae47e8636156a9accff64c02c0924cbebad62854c4a6dbdc110cd5b4b341a"},
@@ -619,7 +619,7 @@ version = "1.8.0"
 description = "A python wrapper of the C library 'Google CRC32C'"
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "google_crc32c-1.8.0-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:0470b8c3d73b5f4e3300165498e4cf25221c7eb37f1159e221d1825b6df8a7ff"},
     {file = "google_crc32c-1.8.0-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:119fcd90c57c89f30040b47c211acee231b25a45d225e3225294386f5d258288"},
@@ -662,7 +662,7 @@ version = "3.16.0"
 description = "Read and write HDF5 files from Python"
 optional = false
 python-versions = ">=3.10"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "h5py-3.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e06f864bedb2c8e7c1358e6c73af48519e317457c444d6f3d332bb4e8fa6d7d9"},
     {file = "h5py-3.16.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:ec86d4fffd87a0f4cb3d5796ceb5a50123a2a6d99b43e616e5504e66a953eca3"},
@@ -723,7 +723,7 @@ version = "2.6.17"
 description = "File identification library for Python"
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "identify-2.6.17-py2.py3-none-any.whl", hash = "sha256:be5f8412d5ed4b20f2bd41a65f920990bdccaa6a4a18a08f1eefdcd0bdd885f0"},
     {file = "identify-2.6.17.tar.gz", hash = "sha256:f816b0b596b204c9fdf076ded172322f2723cf958d02f9c3587504834c8ff04d"},
@@ -779,7 +779,7 @@ version = "8.7.1"
 description = "Read metadata from Python packages"
 optional = false
 python-versions = ">=3.9"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "importlib_metadata-8.7.1-py3-none-any.whl", hash = "sha256:5a1f80bf1daa489495071efbb095d75a634cf28a8bc299581244063b53176151"},
     {file = "importlib_metadata-8.7.1.tar.gz", hash = "sha256:49fef1ae6440c182052f407c8d34a68f72efc36db9ca90dc0113398f2fdde8bb"},
@@ -803,7 +803,7 @@ version = "2.3.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
 python-versions = ">=3.10"
-groups = ["benchmark", "test"]
+groups = ["dev"]
 files = [
     {file = "iniconfig-2.3.0-py3-none-any.whl", hash = "sha256:f631c04d2c48c52b84d0d0549c99ff3859c98df65b3101406327ecc7d53fbf12"},
     {file = "iniconfig-2.3.0.tar.gz", hash = "sha256:c76315c77db068650d49c5b56314774a7804df16fee4402c1f19d6d15d8c4730"},
@@ -815,7 +815,7 @@ version = "0.13.13"
 description = "IPython-enabled pdb"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "ipdb-0.13.13-py3-none-any.whl", hash = "sha256:45529994741c4ab6d2388bfa5d7b725c2cf7fe9deffabdb8a6113aa5ed449ed4"},
     {file = "ipdb-0.13.13.tar.gz", hash = "sha256:e3ac6018ef05126d442af680aad863006ec19d02290561ac88b8b1c0b0cfc726"},
@@ -831,7 +831,7 @@ version = "9.10.0"
 description = "IPython: Productive Interactive Computing"
 optional = false
 python-versions = ">=3.11"
-groups = ["test"]
+groups = ["dev"]
 markers = "python_version == \"3.11\""
 files = [
     {file = "ipython-9.10.0-py3-none-any.whl", hash = "sha256:c6ab68cc23bba8c7e18e9b932797014cc61ea7fd6f19de180ab9ba73e65ee58d"},
@@ -865,7 +865,7 @@ version = "9.11.0"
 description = "IPython: Productive Interactive Computing"
 optional = false
 python-versions = ">=3.12"
-groups = ["test"]
+groups = ["dev"]
 markers = "python_version >= \"3.12\""
 files = [
     {file = "ipython-9.11.0-py3-none-any.whl", hash = "sha256:6922d5bcf944c6e525a76a0a304451b60a2b6f875e86656d8bc2dfda5d710e19"},
@@ -898,7 +898,7 @@ version = "1.1.1"
 description = "Defines a variety of Pygments lexers for highlighting IPython code."
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "ipython_pygments_lexers-1.1.1-py3-none-any.whl", hash = "sha256:a9462224a505ade19a605f71f8fa63c2048833ce50abc86768a0d81d876dc81c"},
     {file = "ipython_pygments_lexers-1.1.1.tar.gz", hash = "sha256:09c0138009e56b6854f9535736f4171d855c8c08a563a0dcd8022f78355c7e81"},
@@ -913,7 +913,7 @@ version = "0.19.2"
 description = "An autocompletion tool for Python that can be used for text editors."
 optional = false
 python-versions = ">=3.6"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "jedi-0.19.2-py2.py3-none-any.whl", hash = "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9"},
     {file = "jedi-0.19.2.tar.gz", hash = "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0"},
@@ -933,7 +933,7 @@ version = "3.1.6"
 description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
-groups = ["doc", "test"]
+groups = ["dev", "doc"]
 files = [
     {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"},
     {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"},
@@ -951,7 +951,7 @@ version = "1.5.3"
 description = "Lightweight pipelining with Python functions"
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "joblib-1.5.3-py3-none-any.whl", hash = "sha256:5fc3c5039fc5ca8c0276333a188bbd59d6b7ab37fe6632daa76bc7f9ec18e713"},
     {file = "joblib-1.5.3.tar.gz", hash = "sha256:8561a3269e6801106863fd0d6d84bb737be9e7631e33aaed3fb9ce5953688da3"},
@@ -963,7 +963,7 @@ version = "1.5.0"
 description = "A fast implementation of the Cassowary constraint solver"
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "kiwisolver-1.5.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:32cc0a5365239a6ea0c6ed461e8838d053b57e397443c0ca894dcc8e388d4374"},
     {file = "kiwisolver-1.5.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:cc0b66c1eec9021353a4b4483afb12dfd50e3669ffbb9152d6842eb34c7e29fd"},
@@ -1090,7 +1090,7 @@ version = "1.5"
 description = "Legacy API wrapper."
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "legacy_api_wrap-1.5-py3-none-any.whl", hash = "sha256:5a8ea50e3e3bcbcdec3447b77034fd0d32cb2cf4089db799238708e4d7e0098d"},
     {file = "legacy_api_wrap-1.5.tar.gz", hash = "sha256:b41ba6532f3ebfe3a897a35a7f97dec3be04b92a450f6c2bcf89f1b91c9cadf2"},
@@ -1105,7 +1105,7 @@ version = "2.1.0"
 description = "Links recognition library with FULL unicode support."
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "linkify_it_py-2.1.0-py3-none-any.whl", hash = "sha256:0d252c1594ecba2ecedc444053db5d3a9b7ec1b0dd929c8f1d74dce89f86c05e"},
     {file = "linkify_it_py-2.1.0.tar.gz", hash = "sha256:43360231720999c10e9328dc3691160e27a718e280673d444c38d7d3aaa3b98b"},
@@ -1126,7 +1126,7 @@ version = "0.46.0"
 description = "lightweight wrapper around basic LLVM functionality"
 optional = false
 python-versions = ">=3.10"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "llvmlite-0.46.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:4323177e936d61ae0f73e653e2e614284d97d14d5dd12579adc92b6c2b0597b0"},
     {file = "llvmlite-0.46.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:0a2d461cb89537b7c20feb04c46c32e12d5ad4f0896c9dfc0f60336219ff248e"},
@@ -1176,7 +1176,7 @@ version = "4.0.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 optional = false
 python-versions = ">=3.10"
-groups = ["doc", "test"]
+groups = ["dev", "doc"]
 files = [
     {file = "markdown_it_py-4.0.0-py3-none-any.whl", hash = "sha256:87327c59b172c5011896038353a81343b6754500a08cd7a4973bb48c6d578147"},
     {file = "markdown_it_py-4.0.0.tar.gz", hash = "sha256:cb0a2b4aa34f932c007117b194e945bd74e0ec24133ceb5bac59009cda1cb9f3"},
@@ -1201,7 +1201,7 @@ version = "3.0.3"
 description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.9"
-groups = ["doc", "test"]
+groups = ["dev", "doc"]
 files = [
     {file = "markupsafe-3.0.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2f981d352f04553a7171b8e44369f2af4055f888dfb147d55e42d29e29e74559"},
     {file = "markupsafe-3.0.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e1c1493fb6e50ab01d20a22826e57520f1284df32f2d8601fdd90b6304601419"},
@@ -1300,7 +1300,7 @@ version = "3.10.8"
 description = "Python plotting package"
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "matplotlib-3.10.8-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:00270d217d6b20d14b584c521f810d60c5c78406dc289859776550df837dcda7"},
     {file = "matplotlib-3.10.8-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:37b3c1cc42aa184b3f738cfa18c1c1d72fd496d85467a6cf7b807936d39aa656"},
@@ -1379,7 +1379,7 @@ version = "0.2.1"
 description = "Inline Matplotlib backend for Jupyter"
 optional = false
 python-versions = ">=3.9"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "matplotlib_inline-0.2.1-py3-none-any.whl", hash = "sha256:d56ce5156ba6085e00a9d54fead6ed29a9c47e215cd1bba2e976ef39f5710a76"},
     {file = "matplotlib_inline-0.2.1.tar.gz", hash = "sha256:e1ee949c340d771fc39e241ea75683deb94762c8fa5f2927ec57c83c4dffa9fe"},
@@ -1397,7 +1397,7 @@ version = "0.5.0"
 description = "Collection of plugins for markdown-it-py"
 optional = false
 python-versions = ">=3.10"
-groups = ["doc", "test"]
+groups = ["dev", "doc"]
 files = [
     {file = "mdit_py_plugins-0.5.0-py3-none-any.whl", hash = "sha256:07a08422fc1936a5d26d146759e9155ea466e842f5ab2f7d2266dd084c8dab1f"},
     {file = "mdit_py_plugins-0.5.0.tar.gz", hash = "sha256:f4918cb50119f50446560513a8e311d574ff6aaed72606ddae6d35716fe809c6"},
@@ -1417,7 +1417,7 @@ version = "0.1.2"
 description = "Markdown URL utilities"
 optional = false
 python-versions = ">=3.7"
-groups = ["doc", "test"]
+groups = ["dev", "doc"]
 files = [
     {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
     {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
@@ -1429,7 +1429,7 @@ version = "0.61.0"
 description = "A module for monitoring memory usage of a python program"
 optional = false
 python-versions = ">=3.5"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "memory_profiler-0.61.0-py3-none-any.whl", hash = "sha256:400348e61031e3942ad4d4109d18753b2fb08c2f6fb8290671c5513a34182d84"},
     {file = "memory_profiler-0.61.0.tar.gz", hash = "sha256:4e5b73d7864a1d1292fb76a03e82a3e78ef934d06828a698d9dada76da2067b0"},
@@ -1444,7 +1444,7 @@ version = "1.19.2"
 description = "A memory profiler for Python applications"
 optional = false
 python-versions = ">=3.7.0"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "memray-1.19.2-cp310-cp310-macosx_10_14_x86_64.whl", hash = "sha256:50d7130bb0c8609176b3b691c8b67fc92805180166e087549a59e7881ae8cf36"},
     {file = "memray-1.19.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:3643d601c4c1c413a62fb296598ed05dce1e1c3a58ea5c8659ae98ad36ce3a7a"},
@@ -1542,7 +1542,7 @@ version = "8.4.0"
 description = "Simple yet flexible natural sorting in Python."
 optional = false
 python-versions = ">=3.7"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "natsort-8.4.0-py3-none-any.whl", hash = "sha256:4732914fb471f56b5cce04d7bae6f164a592c7712e1c85f9ef585e197299521c"},
     {file = "natsort-8.4.0.tar.gz", hash = "sha256:45312c4a0e5507593da193dedd04abb1469253b601ecaf63445ad80f0a1ea581"},
@@ -1558,7 +1558,7 @@ version = "3.6"
 description = "Python package for creating and manipulating graphs and networks"
 optional = false
 python-versions = ">=3.11"
-groups = ["test"]
+groups = ["dev"]
 markers = "python_version >= \"3.12\""
 files = [
     {file = "networkx-3.6-py3-none-any.whl", hash = "sha256:cdb395b105806062473d3be36458d8f1459a4e4b98e236a66c3a48996e07684f"},
@@ -1582,7 +1582,7 @@ version = "3.6.1"
 description = "Python package for creating and manipulating graphs and networks"
 optional = false
 python-versions = "!=3.14.1,>=3.11"
-groups = ["test"]
+groups = ["dev"]
 markers = "python_version == \"3.11\""
 files = [
     {file = "networkx-3.6.1-py3-none-any.whl", hash = "sha256:d47fbf302e7d9cbbb9e2555a0d267983d2aa476bac30e90dfbe5669bd57f3762"},
@@ -1606,7 +1606,7 @@ version = "1.10.0"
 description = "Node.js virtual environment builder"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "nodeenv-1.10.0-py2.py3-none-any.whl", hash = "sha256:5bb13e3eed2923615535339b3c620e76779af4cb4c6a90deccc9e36b274d3827"},
     {file = "nodeenv-1.10.0.tar.gz", hash = "sha256:996c191ad80897d076bdfba80a41994c2b47c68e224c542b48feba42ba00f8bb"},
@@ -1618,7 +1618,7 @@ version = "0.64.0"
 description = "compiling Python code using LLVM"
 optional = false
 python-versions = ">=3.10"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "numba-0.64.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:cc09b79440952e3098eeebea4bf6e8d2355fb7f12734fcd9fc5039f0dca90727"},
     {file = "numba-0.64.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:1afe3a80b8c2f376b211fb7a49e536ef9eafc92436afc95a2f41ea5392f8cc65"},
@@ -1653,7 +1653,7 @@ version = "0.1.1"
 description = "Numba-accelerated Mann-Whitney U test with sparse matrix support."
 optional = false
 python-versions = ">=3.11"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "numba_mwu-0.1.1-py3-none-any.whl", hash = "sha256:994cde066cf387b7271baed307e5d9cbc2e1127c51785f3ec9e4b22fd300d7be"},
     {file = "numba_mwu-0.1.1.tar.gz", hash = "sha256:dfb74ff5d84c8923efeb1abbee56e3a4fdf3d8bdb8ce5f50a786d1ac84b3a400"},
@@ -1669,7 +1669,7 @@ version = "0.16.5"
 description = "A Python package providing buffer compression and transformation codecs for use in data storage and communication applications."
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "numcodecs-0.16.5-cp311-cp311-macosx_10_13_x86_64.whl", hash = "sha256:78382dcea50622f2ef1e6e7a71dbe7f861d8fe376b27b7c297c26907304fef1e"},
     {file = "numcodecs-0.16.5-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:e2d04a19cb57a3c519b4127ac377cca6471aee1990d7c18f5b1e3a4fe1306689"},
@@ -1714,7 +1714,7 @@ version = "2.4.3"
 description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "numpy-2.4.3-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:33b3bf58ee84b172c067f56aeadc7ee9ab6de69c5e800ab5b10295d54c581adb"},
     {file = "numpy-2.4.3-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:8ba7b51e71c05aa1f9bc3641463cd82308eab40ce0d5c7e1fd4038cbf9938147"},
@@ -1796,7 +1796,7 @@ version = "26.0"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
-groups = ["main", "benchmark", "doc", "test"]
+groups = ["main", "dev", "doc"]
 files = [
     {file = "packaging-26.0-py3-none-any.whl", hash = "sha256:b36f1fef9334a5588b4166f8bcd26a14e521f2b55e6b9de3aaa80d3ff7a37529"},
     {file = "packaging-26.0.tar.gz", hash = "sha256:00243ae351a257117b6a241061796684b084ed1c516a08c48a3f7e147a9d80b4"},
@@ -1808,7 +1808,7 @@ version = "2.3.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "pandas-2.3.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:376c6446ae31770764215a6c937f72d917f214b43560603cd60da6408f183b6c"},
     {file = "pandas-2.3.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e19d192383eab2f4ceb30b412b22ea30690c9e618f78870357ae1d682912015a"},
@@ -1907,7 +1907,7 @@ version = "0.8.6"
 description = "A Python Parser"
 optional = false
 python-versions = ">=3.6"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "parso-0.8.6-py2.py3-none-any.whl", hash = "sha256:2c549f800b70a5c4952197248825584cb00f033b29c692671d3bf08bf380baff"},
     {file = "parso-0.8.6.tar.gz", hash = "sha256:2b9a0332696df97d454fa67b81618fd69c35a7b90327cbe6ba5c92d2c68a7bfd"},
@@ -1923,7 +1923,7 @@ version = "1.0.2"
 description = "A Python package for describing statistical models and for building design matrices."
 optional = false
 python-versions = ">=3.6"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "patsy-1.0.2-py2.py3-none-any.whl", hash = "sha256:37bfddbc58fcf0362febb5f54f10743f8b21dd2aa73dec7e7ef59d1b02ae668a"},
     {file = "patsy-1.0.2.tar.gz", hash = "sha256:cdc995455f6233e90e22de72c37fcadb344e7586fb83f06696f54d92f8ce74c0"},
@@ -1941,7 +1941,7 @@ version = "0.2.1"
 description = "Parallel differential expression for single-cell perturbation sequencing"
 optional = false
 python-versions = ">=3.11"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "pdex-0.2.1-py3-none-any.whl", hash = "sha256:f2c891288d30ef304ec1bf266577ef6ac3dc1e5ae122240b5f49ee9902514b8f"},
     {file = "pdex-0.2.1.tar.gz", hash = "sha256:fc6778ee71c5cbf871679a38a98980442433b6581ce114dec86d61145496504f"},
@@ -1964,7 +1964,7 @@ version = "4.9.0"
 description = "Pexpect allows easy control of interactive console applications."
 optional = false
 python-versions = "*"
-groups = ["test"]
+groups = ["dev"]
 markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\""
 files = [
     {file = "pexpect-4.9.0-py2.py3-none-any.whl", hash = "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523"},
@@ -1980,7 +1980,7 @@ version = "12.1.1"
 description = "Python Imaging Library (fork)"
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "pillow-12.1.1-cp310-cp310-macosx_10_10_x86_64.whl", hash = "sha256:1f1625b72740fdda5d77b4def688eb8fd6490975d06b909fd19f13f391e077e0"},
     {file = "pillow-12.1.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:178aa072084bd88ec759052feca8e56cbb14a60b39322b99a049e58090479713"},
@@ -2089,7 +2089,7 @@ version = "4.9.4"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "platformdirs-4.9.4-py3-none-any.whl", hash = "sha256:68a9a4619a666ea6439f2ff250c12a853cd1cbd5158d258bd824a7df6be2f868"},
     {file = "platformdirs-4.9.4.tar.gz", hash = "sha256:1ec356301b7dc906d83f371c8f487070e99d3ccf9e501686456394622a01a934"},
@@ -2101,7 +2101,7 @@ version = "1.6.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
 python-versions = ">=3.9"
-groups = ["benchmark", "test"]
+groups = ["dev"]
 files = [
     {file = "pluggy-1.6.0-py3-none-any.whl", hash = "sha256:e920276dd6813095e9377c0bc5566d94c932c33b27a3e3945d8389c374dd4746"},
     {file = "pluggy-1.6.0.tar.gz", hash = "sha256:7dcc130b76258d33b90f61b658791dede3486c3e6bfb003ee5c9bfb396dd22f3"},
@@ -2117,7 +2117,7 @@ version = "1.39.3"
 description = "Blazingly fast DataFrame library"
 optional = false
 python-versions = ">=3.10"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "polars-1.39.3-py3-none-any.whl", hash = "sha256:c2b955ccc0a08a2bc9259785decf3d5c007b489b523bf2390cf21cec2bb82a56"},
     {file = "polars-1.39.3.tar.gz", hash = "sha256:2e016c7f3e8d14fa777ef86fe0477cec6c67023a20ba4c94d6e8431eefe4a63c"},
@@ -2161,7 +2161,7 @@ version = "1.39.3"
 description = "Blazingly fast DataFrame library"
 optional = false
 python-versions = ">=3.10"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "polars_runtime_32-1.39.3-cp310-abi3-macosx_10_12_x86_64.whl", hash = "sha256:425c0b220b573fa097b4042edff73114cc6d23432a21dfd2dc41adf329d7d2e9"},
     {file = "polars_runtime_32-1.39.3-cp310-abi3-macosx_11_0_arm64.whl", hash = "sha256:ef5884711e3c617d7dc93519a7d038e242f5741cfe5fe9afd32d58845d86c562"},
@@ -2180,7 +2180,7 @@ version = "4.5.1"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "pre_commit-4.5.1-py2.py3-none-any.whl", hash = "sha256:3b3afd891e97337708c1674210f8eba659b52a38ea5f822ff142d10786221f77"},
     {file = "pre_commit-4.5.1.tar.gz", hash = "sha256:eb545fcff725875197837263e977ea257a402056661f09dae08e4b149b030a61"},
@@ -2199,7 +2199,7 @@ version = "3.0.52"
 description = "Library for building powerful interactive command lines in Python"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "prompt_toolkit-3.0.52-py3-none-any.whl", hash = "sha256:9aac639a3bbd33284347de5ad8d68ecc044b91a762dc39b7c21095fcd6a19955"},
     {file = "prompt_toolkit-3.0.52.tar.gz", hash = "sha256:28cde192929c8e7321de85de1ddbe736f1375148b02f2e17edd840042b1be855"},
@@ -2214,7 +2214,7 @@ version = "7.2.2"
 description = "Cross-platform lib for process and system monitoring."
 optional = false
 python-versions = ">=3.6"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "psutil-7.2.2-cp313-cp313t-macosx_10_13_x86_64.whl", hash = "sha256:2edccc433cbfa046b980b0df0171cd25bcaeb3a68fe9022db0979e7aa74a826b"},
     {file = "psutil-7.2.2-cp313-cp313t-macosx_11_0_arm64.whl", hash = "sha256:e78c8603dcd9a04c7364f1a3e670cea95d51ee865e4efb3556a3a63adef958ea"},
@@ -2249,7 +2249,7 @@ version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
 optional = false
 python-versions = "*"
-groups = ["test"]
+groups = ["dev"]
 markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\""
 files = [
     {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"},
@@ -2262,7 +2262,7 @@ version = "0.2.3"
 description = "Safely evaluate AST nodes without side effects"
 optional = false
 python-versions = "*"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "pure_eval-0.2.3-py3-none-any.whl", hash = "sha256:1db8e35b67b3d218d818ae653e27f06c3aa420901fa7b081ca98cbedc874e0d0"},
     {file = "pure_eval-0.2.3.tar.gz", hash = "sha256:5f4e983f40564c576c7c8635ae88db5956bb2229d7e9237d03b3c0b0190eaf42"},
@@ -2277,7 +2277,7 @@ version = "9.0.0"
 description = "Get CPU info with pure Python"
 optional = false
 python-versions = "*"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "py-cpuinfo-9.0.0.tar.gz", hash = "sha256:3cdbbf3fac90dc6f118bfd64384f309edeadd902d7c8fb17f02ffa1fc3f49690"},
     {file = "py_cpuinfo-9.0.0-py3-none-any.whl", hash = "sha256:859625bc251f64e21f077d099d4162689c762b5d6a4c3c97553d56241c9674d5"},
@@ -2289,7 +2289,7 @@ version = "23.0.1"
 description = "Python library for Apache Arrow"
 optional = false
 python-versions = ">=3.10"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "pyarrow-23.0.1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:3fab8f82571844eb3c460f90a75583801d14ca0cc32b1acc8c361650e006fd56"},
     {file = "pyarrow-23.0.1-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:3f91c038b95f71ddfc865f11d5876c42f343b4495535bd262c7b321b0b94507c"},
@@ -2349,7 +2349,7 @@ version = "3.1.0"
 description = "A Python svg graph plotting library"
 optional = false
 python-versions = ">=3.8"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "pygal-3.1.0-py3-none-any.whl", hash = "sha256:4e923490f3490c90c481f4535fa3adcda20ff374257ab9d8ae897f91b632c0bb"},
     {file = "pygal-3.1.0.tar.gz", hash = "sha256:fbdee7351a7423e7907fb8a9c3b77305f6b5678cb2e6fd0db36a8825e42955ec"},
@@ -2371,7 +2371,7 @@ version = "1.0.2"
 description = "Python package providing assets from https://github.com/Kozea/pygal.js"
 optional = false
 python-versions = "*"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "pygaljs-1.0.2-py2.py3-none-any.whl", hash = "sha256:d75e18cb21cc2cda40c45c3ee690771e5e3d4652bf57206f20137cf475c0dbe8"},
     {file = "pygaljs-1.0.2.tar.gz", hash = "sha256:0b71ee32495dcba5fbb4a0476ddbba07658ad65f5675e4ad409baf154dec5111"},
@@ -2383,7 +2383,7 @@ version = "2.19.2"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.8"
-groups = ["benchmark", "doc", "test"]
+groups = ["dev", "doc"]
 files = [
     {file = "pygments-2.19.2-py3-none-any.whl", hash = "sha256:86540386c03d588bb81d44bc3928634ff26449851e99741617ecb9037ee5ec0b"},
     {file = "pygments-2.19.2.tar.gz", hash = "sha256:636cb2477cec7f8952536970bc533bc43743542f70392ae026374600add5b887"},
@@ -2398,7 +2398,7 @@ version = "0.6.0"
 description = "Nearest Neighbor Descent"
 optional = false
 python-versions = "*"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "pynndescent-0.6.0-py3-none-any.whl", hash = "sha256:dc8c74844e4c7f5cbd1e0cd6909da86fdc789e6ff4997336e344779c3d5538ef"},
     {file = "pynndescent-0.6.0.tar.gz", hash = "sha256:7ffde0fb5b400741e055a9f7d377e3702e02250616834231f6c209e39aac24f5"},
@@ -2420,7 +2420,7 @@ version = "3.3.2"
 description = "pyparsing - Classes and methods to define and execute parsing grammars"
 optional = false
 python-versions = ">=3.9"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "pyparsing-3.3.2-py3-none-any.whl", hash = "sha256:850ba148bd908d7e2411587e247a1e4f0327839c40e2e5e6d05a007ecc69911d"},
     {file = "pyparsing-3.3.2.tar.gz", hash = "sha256:c777f4d763f140633dcb6d8a3eda953bf7a214dc4eff598413c070bcdc117cbc"},
@@ -2435,7 +2435,7 @@ version = "8.4.2"
 description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.9"
-groups = ["benchmark", "test"]
+groups = ["dev"]
 files = [
     {file = "pytest-8.4.2-py3-none-any.whl", hash = "sha256:872f880de3fc3a5bdc88a11b39c9710c3497a547cfa9320bc3c5e62fbf272e79"},
     {file = "pytest-8.4.2.tar.gz", hash = "sha256:86c0d0b93306b961d58d62a4db4879f27fe25513d4b969df351abdddb3c30e01"},
@@ -2457,7 +2457,7 @@ version = "5.2.3"
 description = "A ``pytest`` fixture for benchmarking code. It will group the tests into rounds that are calibrated to the chosen timer."
 optional = false
 python-versions = ">=3.9"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "pytest_benchmark-5.2.3-py3-none-any.whl", hash = "sha256:bc839726ad20e99aaa0d11a127445457b4219bdb9e80a1afc4b51da7f96b0803"},
     {file = "pytest_benchmark-5.2.3.tar.gz", hash = "sha256:deb7317998a23c650fd4ff76e1230066a76cb45dcece0aca5607143c619e7779"},
@@ -2481,7 +2481,7 @@ version = "1.8.0"
 description = "A simple plugin to use with pytest"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "pytest_memray-1.8.0-py3-none-any.whl", hash = "sha256:44da9fe0d98541abf4cc76acea6e4a9c525b3c8e604655e5537705f336c9b875"},
     {file = "pytest_memray-1.8.0.tar.gz", hash = "sha256:c0c706ef81941a7aa7064f2b3b8b5cdc0cea72b5277c6a6a09b113ca9ab30bdb"},
@@ -2502,7 +2502,7 @@ version = "0.2.0"
 description = "Select pytest tests with regular expressions"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "pytest-regex-0.2.0.tar.gz", hash = "sha256:f4076c49abece2503815c8b2e282a8fd22d330f06f9bf91d620b3ef02de7a353"},
     {file = "pytest_regex-0.2.0-py3-none-any.whl", hash = "sha256:c97e9c49e8c7e7482bd1fa701e3a5cccd18eb78d263752e32dba4937d8cee6d9"},
@@ -2517,7 +2517,7 @@ version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
     {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"},
@@ -2532,7 +2532,7 @@ version = "1.1.3"
 description = "Python interpreter discovery"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "python_discovery-1.1.3-py3-none-any.whl", hash = "sha256:90e795f0121bc84572e737c9aa9966311b9fde44ffb88a5953b3ec9b31c6945e"},
     {file = "python_discovery-1.1.3.tar.gz", hash = "sha256:7acca36e818cd88e9b2ba03e045ad7e93e1713e29c6bbfba5d90202310b7baa5"},
@@ -2552,7 +2552,7 @@ version = "2026.1.post1"
 description = "World timezone definitions, modern and historical"
 optional = false
 python-versions = "*"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "pytz-2026.1.post1-py2.py3-none-any.whl", hash = "sha256:f2fd16142fda348286a75e1a524be810bb05d444e5a081f37f7affc635035f7a"},
     {file = "pytz-2026.1.post1.tar.gz", hash = "sha256:3378dde6a0c3d26719182142c56e60c7f9af7e968076f31aae569d72a0358ee1"},
@@ -2564,7 +2564,7 @@ version = "6.0.3"
 description = "YAML parser and emitter for Python"
 optional = false
 python-versions = ">=3.8"
-groups = ["main", "benchmark", "doc", "test"]
+groups = ["main", "dev", "doc"]
 files = [
     {file = "PyYAML-6.0.3-cp38-cp38-macosx_10_13_x86_64.whl", hash = "sha256:c2514fceb77bc5e7a2f7adfaa1feb2fb311607c9cb518dbc378688ec73d8292f"},
     {file = "PyYAML-6.0.3-cp38-cp38-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:9c57bb8c96f6d1808c030b1687b9b5fb476abaa47f0db9c0101f5e9f394e97f4"},
@@ -2669,7 +2669,7 @@ version = "14.3.3"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 optional = false
 python-versions = ">=3.8.0"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "rich-14.3.3-py3-none-any.whl", hash = "sha256:793431c1f8619afa7d3b52b2cdec859562b950ea0d4b6b505397612db8d5362d"},
     {file = "rich-14.3.3.tar.gz", hash = "sha256:b8daa0b9e4eef54dd8cf7c86c03713f53241884e814f4e2f5fb342fe520f639b"},
@@ -2700,7 +2700,7 @@ version = "1.11.5"
 description = "Single-Cell Analysis in Python."
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 markers = "python_version == \"3.11\""
 files = [
     {file = "scanpy-1.11.5-py3-none-any.whl", hash = "sha256:fcd383ddcf7acbf7c0ca232c25ad51b00aec9f8d2f7c8954b8c6ee0962257166"},
@@ -2754,7 +2754,7 @@ version = "1.12"
 description = "Single-Cell Analysis in Python."
 optional = false
 python-versions = ">=3.12"
-groups = ["test"]
+groups = ["dev"]
 markers = "python_version >= \"3.12\""
 files = [
     {file = "scanpy-1.12-py3-none-any.whl", hash = "sha256:0b89827f9ba9fea8fce5a49b311e9ce34a23f922b7d8506fa845a2dc92ef0bfe"},
@@ -2806,7 +2806,7 @@ version = "1.8.0"
 description = "A set of python modules for machine learning and data mining"
 optional = false
 python-versions = ">=3.11"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "scikit_learn-1.8.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:146b4d36f800c013d267b29168813f7a03a43ecd2895d04861f1240b564421da"},
     {file = "scikit_learn-1.8.0-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:f984ca4b14914e6b4094c5d52a32ea16b49832c03bd17a110f004db3c223e8e1"},
@@ -2868,7 +2868,7 @@ version = "1.17.1"
 description = "Fundamental algorithms for scientific computing in Python"
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "scipy-1.17.1-cp311-cp311-macosx_10_14_x86_64.whl", hash = "sha256:1f95b894f13729334fb990162e911c9e5dc1ab390c58aa6cbecb389c5b5e28ec"},
     {file = "scipy-1.17.1-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:e18f12c6b0bc5a592ed23d3f7b891f68fd7f8241d69b7883769eb5d5dfb52696"},
@@ -2947,7 +2947,7 @@ version = "0.13.2"
 description = "Statistical data visualization"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "seaborn-0.13.2-py3-none-any.whl", hash = "sha256:636f8336facf092165e27924f223d3c62ca560b1f2bb5dff7ab7fad265361987"},
     {file = "seaborn-0.13.2.tar.gz", hash = "sha256:93e60a40988f4d65e9f4885df477e2fdaff6b73a9ded434c1ab356dd57eefff7"},
@@ -2969,7 +2969,7 @@ version = "0.4"
 description = "Print versions of imported packages."
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "session_info2-0.4-py3-none-any.whl", hash = "sha256:1c06604853acd43d8cdcc9e815efbdf5534d728234e8374dea1eef29496bb1df"},
     {file = "session_info2-0.4.tar.gz", hash = "sha256:bb01bf7c320301d6cbcfad36b85cca7befe537ffd60269be38ae9e1a956f4aa4"},
@@ -2987,7 +2987,7 @@ version = "82.0.1"
 description = "Most extensible Python build backend with support for C/C++ extension modules"
 optional = false
 python-versions = ">=3.9"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "setuptools-82.0.1-py3-none-any.whl", hash = "sha256:a59e362652f08dcd477c78bb6e7bd9d80a7995bc73ce773050228a348ce2e5bb"},
     {file = "setuptools-82.0.1.tar.gz", hash = "sha256:7d872682c5d01cfde07da7bccc7b65469d3dca203318515ada1de5eda35efbf9"},
@@ -3008,7 +3008,7 @@ version = "1.17.0"
 description = "Python 2 and 3 compatibility utilities"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"},
     {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"},
@@ -3226,7 +3226,7 @@ version = "0.6.3"
 description = "Extract data from python stack frames and tracebacks for informative displays"
 optional = false
 python-versions = "*"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"},
     {file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"},
@@ -3246,7 +3246,7 @@ version = "0.14.6"
 description = "Statistical computations and models for Python"
 optional = false
 python-versions = ">=3.9"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "statsmodels-0.14.6-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:f4ff0649a2df674c7ffb6fa1a06bffdb82a6adf09a48e90e000a15a6aaa734b0"},
     {file = "statsmodels-0.14.6-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:109012088b3e370080846ab053c76d125268631410142daad2f8c10770e8e8d9"},
@@ -3304,7 +3304,7 @@ version = "8.1.1"
 description = "Modern Text User Interface framework"
 optional = false
 python-versions = "<4.0,>=3.9"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "textual-8.1.1-py3-none-any.whl", hash = "sha256:6712f96e335cd782e76193dee16b9c8875fe0699d923bc8d3f1228fd23e773a6"},
     {file = "textual-8.1.1.tar.gz", hash = "sha256:eef0256a6131f06a20ad7576412138c1f30f92ddeedd055953c08d97044bc317"},
@@ -3327,7 +3327,7 @@ version = "3.6.0"
 description = "threadpoolctl"
 optional = false
 python-versions = ">=3.9"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "threadpoolctl-3.6.0-py3-none-any.whl", hash = "sha256:43a0b8fd5a2928500110039e43a5eed8480b918967083ea48dc3ab9f13c4a7fb"},
     {file = "threadpoolctl-3.6.0.tar.gz", hash = "sha256:8ab8b4aa3491d812b623328249fab5302a68d2d71745c8a4c719a2fcaba9f44e"},
@@ -3339,7 +3339,7 @@ version = "2.4.1"
 description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "tomli-2.4.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:f8f0fc26ec2cc2b965b7a3b87cd19c5c6b8c5e5f436b984e85f486d652285c30"},
     {file = "tomli-2.4.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:4ab97e64ccda8756376892c53a72bd1f964e519c77236368527f758fbc36a53a"},
@@ -3396,7 +3396,7 @@ version = "4.67.3"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "tqdm-4.67.3-py3-none-any.whl", hash = "sha256:ee1e4c0e59148062281c49d80b25b67771a127c85fc9676d3be5f243206826bf"},
     {file = "tqdm-4.67.3.tar.gz", hash = "sha256:7d825f03f89244ef73f1d4ce193cb1774a8179fd96f31d7e1dcde62092b960bb"},
@@ -3418,7 +3418,7 @@ version = "5.14.3"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"},
     {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"},
@@ -3434,7 +3434,7 @@ version = "4.15.0"
 description = "Backported and Experimental Type Hints for Python 3.9+"
 optional = false
 python-versions = ">=3.9"
-groups = ["main", "benchmark", "doc", "test"]
+groups = ["main", "dev", "doc"]
 files = [
     {file = "typing_extensions-4.15.0-py3-none-any.whl", hash = "sha256:f0fa19c6845758ab08074a0cfa8b7aecb71c999ca73d62883bc25cc018c4e548"},
     {file = "typing_extensions-4.15.0.tar.gz", hash = "sha256:0cea48d173cc12fa28ecabc3b837ea3cf6f38c6d1136f85cbaaf598984861466"},
@@ -3446,7 +3446,7 @@ version = "2025.3"
 description = "Provider of IANA time zone data"
 optional = false
 python-versions = ">=2"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "tzdata-2025.3-py2.py3-none-any.whl", hash = "sha256:06a47e5700f3081aab02b2e513160914ff0694bce9947d6b76ebd6bf57cfc5d1"},
     {file = "tzdata-2025.3.tar.gz", hash = "sha256:de39c2ca5dc7b0344f2eba86f49d614019d29f060fc4ebc8a417896a620b56a7"},
@@ -3458,7 +3458,7 @@ version = "2.0.0"
 description = "Micro subset of unicode data files for linkify-it-py projects."
 optional = false
 python-versions = ">=3.10"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "uc_micro_py-2.0.0-py3-none-any.whl", hash = "sha256:3603a3859af53e5a39bc7677713c78ea6589ff188d70f4fee165db88e22b242c"},
     {file = "uc_micro_py-2.0.0.tar.gz", hash = "sha256:c53691e495c8db60e16ffc4861a35469b0ba0821fe409a8a7a0a71864d33a811"},
@@ -3473,7 +3473,7 @@ version = "0.5.11"
 description = "Uniform Manifold Approximation and Projection"
 optional = false
 python-versions = ">=3.9"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "umap_learn-0.5.11-py3-none-any.whl", hash = "sha256:cb17adbde9d544ba79481b3ab4d81ac222e940f3d9219307bea6044f869af3cc"},
     {file = "umap_learn-0.5.11.tar.gz", hash = "sha256:31566ffd495fbf05d7ab3efcba703861c0f5e6fc6998a838d0e2becdd00e54f5"},
@@ -3517,7 +3517,7 @@ version = "21.2.0"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "virtualenv-21.2.0-py3-none-any.whl", hash = "sha256:1bd755b504931164a5a496d217c014d098426cddc79363ad66ac78125f9d908f"},
     {file = "virtualenv-21.2.0.tar.gz", hash = "sha256:1720dc3a62ef5b443092e3f499228599045d7fea4c79199770499df8becf9098"},
@@ -3535,7 +3535,7 @@ version = "0.6.0"
 description = "Measures the displayed width of unicode strings in a terminal"
 optional = false
 python-versions = ">=3.8"
-groups = ["test"]
+groups = ["dev"]
 files = [
     {file = "wcwidth-0.6.0-py3-none-any.whl", hash = "sha256:1a3a1e510b553315f8e146c54764f4fb6264ffad731b3d78088cdb1478ffbdad"},
     {file = "wcwidth-0.6.0.tar.gz", hash = "sha256:cdc4e4262d6ef9a1a57e018384cbeb1208d8abbc64176027e2c2455c81313159"},
@@ -3563,7 +3563,7 @@ version = "3.1.5"
 description = "An implementation of chunked, compressed, N-dimensional arrays for Python"
 optional = false
 python-versions = ">=3.11"
-groups = ["main", "benchmark", "test"]
+groups = ["main", "dev"]
 files = [
     {file = "zarr-3.1.5-py3-none-any.whl", hash = "sha256:29cd905afb6235b94c09decda4258c888fcb79bb6c862ef7c0b8fe009b5c8563"},
     {file = "zarr-3.1.5.tar.gz", hash = "sha256:fbe0c79675a40c996de7ca08e80a1c0a20537bd4a9f43418b6d101395c0bba2b"},
@@ -3592,7 +3592,7 @@ version = "3.23.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.9"
-groups = ["benchmark"]
+groups = ["dev"]
 files = [
     {file = "zipp-3.23.0-py3-none-any.whl", hash = "sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e"},
     {file = "zipp-3.23.0.tar.gz", hash = "sha256:a07157588a12518c9d4034df3fbbee09c814741a33ff63c05fa29d26a2404166"},
@@ -3609,4 +3609,4 @@ type = ["pytest-mypy"]
 [metadata]
 lock-version = "2.1"
 python-versions = ">=3.11,<4.0"
-content-hash = "45f0aa2be672b1964b4e1d6384f22180e7f29224f381e38cdc148583f7789a2d"
+content-hash = "b2a46ccb9e36637b766468fd67483cbf567bff3dabe37e9a70ba164d8a2c8713"
diff --git a/pyproject.toml b/pyproject.toml
index 2819535..dee0923 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -30,21 +30,19 @@ features = ["pyo3/extension-module"]
 module-name = "illico.rust_backend"
 
 [dependency-groups]
-test = [
+dev = [
     "pytest (>=8.4.2,<9.0.0)",
+    "pytest-benchmark (>=5.1.0,<6.0.0)",
+    "pytest-benchmark[histogram] (>=5.2.3,<6.0.0)",
     "pre-commit (>=4.3.0,<5.0.0)",
     "scanpy (>=1.11.5,<2.0.0)",
+    "pytest-memray (>=1.8.0,<2.0.0)",
     "memory-profiler (>=0.61.0,<0.62.0)",
     "pytest-regex (>=0.2.0,<0.3.0)",
-    "ipdb (>=0.13.13,<0.14.0)",
-    "tomli (>=2.4.1,<3.0.0)",
     "memray (>=1.19.1,<2.0.0)",
-    "pytest-memray (>=1.8.0,<2.0.0)",
-]
-benchmark = [
     "pdex (>=0.2.0)",
-    "pytest-benchmark (>=5.1.0,<6.0.0)",
-    "pytest-benchmark[histogram] (>=5.2.3,<6.0.0)",
+    "ipdb (>=0.13.13,<0.14.0)",
+    "tomli (>=2.4.1,<3.0.0)",
 ]
 doc = [
     "Sphinx>=5.0",

From 3c452b22cf8463863023d5170bb607a614e0df76 Mon Sep 17 00:00:00 2001
From: ilan-gold <ilanbassgold@gmail.com>
Date: Mon, 20 Apr 2026 11:43:35 +0200
Subject: [PATCH 5/6] chore: changelog/version

---
 changelog.md   | 4 ++++
 pyproject.toml | 2 +-
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/changelog.md b/changelog.md
index 159b874..868e765 100644
--- a/changelog.md
+++ b/changelog.md
@@ -1,6 +1,10 @@
 Changelog
 =========
 
+Version 0.5.0rc2
+------------
+- For better compatibility with `scanpy`, lower bounds on dependencies have been relaxed.
+
 Version 0.5.0rc1
 ------------
 This version improves compatibility with `scanpy`:
diff --git a/pyproject.toml b/pyproject.toml
index dee0923..e9a0dd9 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "illico"
-version = "0.5.0rc1"
+version = "0.5.0rc2"
 description = "Fast asymptotic mannwhitney-u test"
 authors = [
     {name = "remydubois",email = "remydubois14@gmail.com"}

From e192eda8da414bd44599e54b37150377ea21ef0d Mon Sep 17 00:00:00 2001
From: ilan-gold <ilanbassgold@gmail.com>
Date: Mon, 20 Apr 2026 11:47:27 +0200
Subject: [PATCH 6/6] fix: workflow

---
 .github/workflows/python-package.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yaml b/.github/workflows/python-package.yaml
index 969a3a2..813a32f 100644
--- a/.github/workflows/python-package.yaml
+++ b/.github/workflows/python-package.yaml
@@ -27,7 +27,7 @@ jobs:
         python -m pip install --upgrade poetry
         python -m pip install --upgrade tox
         python -m pip install flake8
-        python -m poetry install --with test
+        python -m poetry install --with dev
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names