Chromatograms/DESCRIPTION at a07a7390067eba8c1c9136b36cba82286b969451 · rformassspectrometry/Chromatograms · GitHub

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Package: Chromatograms
Title: Infrastructure for Chromatographic Mass Spectrometry Data
Version: 1.1.1
Description: The Chromatograms packages defines an efficient infrastructure
   for storing and handling of chromatographic mass spectrometry data. It
   provides different implementations of *backends* to store and represent the
   data. Such backends can be optimized for small memory footprint or fast
   data access/processing. A lazy evaluation queue and chunk-wise processing
   capabilities ensure efficient analysis of also very large data sets.
Authors@R: c(person(given = "Johannes", family = "Rainer",
		    email = "Johannes.Rainer@eurac.edu",
		    role = c("aut"),
		    comment = c(ORCID = "0000-0002-6977-7147")),
		person(given = "Laurent", family = "Gatto",
		    comment = c(ORCID = "0000-0002-1520-2268"),
		    email = "laurent.gatto@uclouvain.be",
		    role = c("aut")),
	     person(given = "Philippine", family = "Louail",
		    email = "philippine.louail@outlook.com",
		    role = c("aut", "cre"),
		    comment = c(ORCID = "0009-0007-5429-6846",
		    fnd = "European Union HORIZON-MSCA-2021 project
		    Grant No. 101073062: HUMAN – Harmonising and Unifying Blood
		    Metabolic Analysis Networks")))
Depends:
    BiocParallel,
    ProtGenerics (>= 1.39.2),
    R (>= 4.5.0)
Imports:
    methods,
    S4Vectors,
    MsCoreUtils (>= 1.7.5),
    Spectra
Suggests:
    msdata (>= 0.19.3),
    roxygen2,
    BiocStyle (>= 2.5.19),
    testthat,
    knitr (>= 1.1.0),
    rmarkdown,
    mzR (>= 2.41.4),
    MsBackendMetaboLights (>= 1.3.1),
    vdiffr,
    IRanges,
    RColorBrewer
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/Chromatograms/issues
URL: https://github.com/RforMassSpectrometry/Chromatograms
biocViews: Infrastructure, Metabolomics, MassSpectrometry, Proteomics
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.3
Collate:
    'AllGenerics.R'
    'ChromBackend-functions.R'
    'ChromBackend.R'
    'hidden_aliases.R'
    'helpers.R'
    'ChromBackendMemory.R'
    'ChromBackendMzR.R'
    'ChromBackendSpectra.R'
    'Chromatograms.R'
    'Chromatograms-chromData.R'
    'Chromatograms-peaksData.R'
    'Chromatograms-plot.R'
    'Chromatograms-processingQueue.R'