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Merge pull request #143 from rformassspectrometry/jomain #298

Merge pull request #143 from rformassspectrometry/jomain

Merge pull request #143 from rformassspectrometry/jomain #298

Triggered via push March 13, 2026 06:35
Status Success
Total duration 18m 20s
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check-bioc.yml

on: push
Matrix: build-check
docker-build-and-push
4s
docker-build-and-push
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18 warnings
ubuntu-latest (devel)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (4.5)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (devel)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (devel)
Label 3 at (1) defined but not used [-Wunused-label]
macOS-latest (devel)
'fin' may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (devel)
Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
macOS-latest (devel)
Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
macOS-latest (devel)
Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
macOS-latest (devel)
Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
macOS-latest (devel)
Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
macOS-latest (devel)
Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (devel)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.6: