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new devel version
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DESCRIPTION

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Package: PSMatch
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Title: Handling and Managing Peptide Spectrum Matches
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Version: 1.13.2
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Version: 1.13.3
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Authors@R:
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c(person(given = "Laurent", family = "Gatto",
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email = "laurent.gatto@uclouvain.be",
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VignetteBuilder: knitr
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BugReports: https://github.com/RforMassSpectrometry/PSM/issues
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URL: https://github.com/RforMassSpectrometry/PSM
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biocViews: Infrastructure, Proteomics, MassSpectrometry
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biocViews: Infrastructure, Proteomics, MassSpectrometry

NEWS.md

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# PSMatch 1.13
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## PSMatch 1.13.3
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- Nothing yet
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## PSMatch 1.13.2
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- Add CITATION to the pre-print (https://doi.org/10.31219/osf.io/62v9p_v2)
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- Add possibility to split protein groups in PSM data with `makeAdjacencyMatrix`
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(see [issue #30](https://github.com/rformassspectrometry/PSMatch/issues/30))
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- Removed `showDetails()` from `setMethod("show", "PSM")` as discussed in
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- Removed `showDetails()` from `setMethod("show", "PSM")` as discussed in
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[issue #30](https://github.com/rformassspectrometry/PSMatch/issues/30)
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- Add `USI` parameter to `plotSpectraPTM`.
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- Correct `filterPsmFdr` output message
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- Update Fragments vignette.
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- Improve `labelFragments()`runtime
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- Update Fragments vignette.
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- Improve `labelFragments()`runtime
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(see [issue #25](https://github.com/rformassspectrometry/PSMatch/issues/25)).
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- Add Selenocysteine and Pyrrolysine to `getAminoAcids()`.
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