Rebuild 2023-2 and 2023-056 for affiliation correction

Author: mitchelloharawild

_articles/RJ-2023-056/RJ-2023-056.Rmd

@@ -58,12 +58,12 @@ nocite: |
 preview: preview.png
 bibliography: RJreferences.bib
 CTV: ~
+legacy_pdf: yes
+legacy_converted: no
 output:
   rjtools::rjournal_web_article:
     self_contained: no
     toc: no
-    legacy_pdf: yes
-
 ---
 ```{=latex}
 \input{RJ-2023-056-src.tex}

_articles/RJ-2023-056/RJ-2023-056.html

@@ -8,8 +8,7 @@
 \bibitem[Boos(1992)]{B92}
 D.~Boos.
 \newblock On generalized score tests.
-\newblock \emph{The American Statistician }, 46\penalty0 (4):\penalty0
-  327--33, 1992.
+\newblock \emph{The American Statistician }, 46\penalty0 (4):\penalty0 327--33, 1992.
 
 \bibitem[Carey(2022)]{C22}
 V.~Carey.
@@ -19,25 +18,21 @@ V.~Carey.
 
 \bibitem[Carey and Wang(2011)]{CW11}
 V.~Carey and Y.-G. Wang.
-\newblock Working covariance model selection for generalized estimating
-  equations.
-\newblock \emph{Statistics in Medicine}, 30\penalty0 (26):\penalty0 3117--3124,
-  2011.
+\newblock Working covariance model selection for generalized estimating equations.
+\newblock \emph{Statistics in Medicine}, 30\penalty0 (26):\penalty0 3117--3124, 2011.
 \newblock URL \url{https://onlinelibrary.wiley.com/doi/abs/10.1002/sim.4300}.
 
 \bibitem[Cook(1986)]{C86}
 R.~Cook.
 \newblock Assessment of local influence.
-\newblock \emph{Journal of the Royal Statistical Society. Series B
-  (Methodological)}, 48\penalty0 (2):\penalty0 133--169, 1986.
+\newblock \emph{Journal of the Royal Statistical Society. Series B (Methodological)}, 48\penalty0 (2):\penalty0 133--169, 1986.
 
 \bibitem[Davidian and Giltinan(1995)]{DG95}
 M.~Davidian and D.~M. Giltinan.
 \newblock \emph{Nonlinear models for repeated measurement data}, volume~62.
 \newblock CRC press, 1995.
 
-\bibitem[Diggle et~al.(2002)Diggle, Diggle, Heagerty, Liang, Zeger,
-  et~al.]{DDHLZ02}
+\bibitem[Diggle et~al.(2002)Diggle, Diggle, Heagerty, Liang, Zeger, et~al.]{DDHLZ02}
 P.~Diggle, P.~J. Diggle, P.~Heagerty, K.-Y. Liang, S.~Zeger, et~al.
 \newblock \emph{Analysis of longitudinal data}.
 \newblock Oxford university press, 2002.
@@ -49,25 +44,20 @@ G.~Fitzmaurice, N.~Laird, and J.~Ware.
 
 \bibitem[Fu et~al.(2018)Fu, Hao, and Wang]{FHW18}
 L.~Fu, Y.~Hao, and Y.-G. Wang.
-\newblock Working correlation structure selection in generalized estimating
-  equations.
+\newblock Working correlation structure selection in generalized estimating equations.
 \newblock \emph{Computational Statistics}, 33:\penalty0 983--96, 2018.
 
 \bibitem[Gosho(2014)]{G14}
 M.~Gosho.
 \newblock Criteria to select a working correlation structure in sas.
-\newblock \emph{Journal of Statistical Software, Code Snippets}, 57\penalty0
-  (1):\penalty0 1--10, 2014.
+\newblock \emph{Journal of Statistical Software, Code Snippets}, 57\penalty0 (1):\penalty0 1--10, 2014.
 \newblock \doi{10.18637/jss.v057.c01}.
-\newblock URL
-  \url{https://www.jstatsoft.org/index.php/jss/article/view/v057c01}.
+\newblock URL \url{https://www.jstatsoft.org/index.php/jss/article/view/v057c01}.
 
 \bibitem[Gosho et~al.(2011)Gosho, Hamada, and Yoshimura]{GHY11}
 M.~Gosho, C.~Hamada, and I.~Yoshimura.
-\newblock Criterion for the selection of a working correlation structure in the
-  generalized estimating equation approach for longitudinal balanced data.
-\newblock \emph{Communications in Statistics - Theory and Methods}, 40\penalty0
-  (21):\penalty0 3839--3856, 2011.
+\newblock Criterion for the selection of a working correlation structure in the generalized estimating equation approach for longitudinal balanced data.
+\newblock \emph{Communications in Statistics - Theory and Methods}, 40\penalty0 (21):\penalty0 3839--3856, 2011.
 
 \bibitem[Gregoire et~al.(1996)Gregoire, Kumar, Everitt, and Studd]{GKES96}
 A.~Gregoire, R.~Kumar, B.~Everitt, and J.~Studd.
@@ -77,47 +67,38 @@ A.~Gregoire, R.~Kumar, B.~Everitt, and J.~Studd.
 \bibitem[Hammill and Preisser(2006)]{HP06}
 B.~Hammill and J.~Preisser.
 \newblock A sas/iml software program for gee and regression diagnostics.
-\newblock \emph{Computational Statistics \& Data Analysis}, 51\penalty0
-  (2):\penalty0 1197--1212, 2006.
+\newblock \emph{Computational Statistics \& Data Analysis}, 51\penalty0 (2):\penalty0 1197--1212, 2006.
 
 \bibitem[Hin et~al.(2007)Hin, Carey, and Wang]{HCW07}
 L.~Hin, V.~Carey, and Y.-G. Wang.
-\newblock Criteria for working-correlation-structure selection in gee:
-  Assessment via simulation.
-\newblock \emph{The American Statistician}, 61\penalty0 (4):\penalty0 360--364,
-  2007.
+\newblock Criteria for working-correlation-structure selection in gee: Assessment via simulation.
+\newblock \emph{The American Statistician}, 61\penalty0 (4):\penalty0 360--364, 2007.
 \newblock URL \url{http://www.jstor.org/stable/27643940}.
 
 \bibitem[Hin and Wang(2009)]{HW09}
 L.-Y. Hin and Y.-G. Wang.
-\newblock Working-correlation-structure identification in generalized
-  estimating equations.
-\newblock \emph{Statistics in Medicine}, 28\penalty0 (4):\penalty0 642--658,
-  2009.
+\newblock Working-correlation-structure identification in generalized estimating equations.
+\newblock \emph{Statistics in Medicine}, 28\penalty0 (4):\penalty0 642--658, 2009.
 
 \bibitem[Højsgaard et~al.(2005)Højsgaard, Halekoh, and Yan]{HHY05}
 S.~Højsgaard, U.~Halekoh, and J.~Yan.
 \newblock The \textsf{R} package geepack for generalized estimating equations.
-\newblock \emph{Journal of Statistical Software}, 15\penalty0 (2):\penalty0
-  1--11, 2005.
+\newblock \emph{Journal of Statistical Software}, 15\penalty0 (2):\penalty0 1--11, 2005.
 
 \bibitem[James et~al.(2013)James, Witten, Hastie, and Tibshirani]{JWHT13}
 G.~James, D.~Witten, T.~Hastie, and R.~Tibshirani.
-\newblock \emph{An Introduction to Statistical Learning: with Applications in
-  R}.
+\newblock \emph{An Introduction to Statistical Learning: with Applications in R}.
 \newblock Springer, 2013.
 
 \bibitem[Jung(2008)]{J08}
 K.-M. Jung.
 \newblock Local influence in generalized estimating equations.
-\newblock \emph{Scandinavian Journal of Statistics}, 35\penalty0 (2):\penalty0
-  286--294, 2008.
+\newblock \emph{Scandinavian Journal of Statistics}, 35\penalty0 (2):\penalty0 286--294, 2008.
 
 \bibitem[Laird(1988)]{L88}
 N.~Laird.
 \newblock Missing data in longitudinal studies.
-\newblock \emph{Statistics in medicine}, 7\penalty0 (1-2):\penalty0 305--315,
-  1988.
+\newblock \emph{Statistics in medicine}, 7\penalty0 (1-2):\penalty0 305--315, 1988.
 
 \bibitem[Liang and Zeger(1986)]{LZ86}
 K.~Liang and S.~Zeger.
@@ -126,29 +107,21 @@ K.~Liang and S.~Zeger.
 
 \bibitem[Lipsitz and Fitzmaurice(2008)]{LF08}
 S.~Lipsitz and G.~Fitzmaurice.
-\newblock \emph{Generalized estimating equations for longitudinal data
-  analysis}, chapter chapter3.
+\newblock \emph{Generalized estimating equations for longitudinal data analysis}, chapter chapter3.
 \newblock CRC Press, 2008.
 
 \bibitem[Lipsitz et~al.(1990)Lipsitz, Laird, and Harrington]{LLH90}
 S.~Lipsitz, N.~Laird, and D.~Harrington.
-\newblock Using the jackknife to estimate the variance of regression estimators
-  from repeated measures studies.
-\newblock \emph{Communications in Statistics - Theory and Methods}, 19\penalty0
-  (3):\penalty0 821--845, 1990.
+\newblock Using the jackknife to estimate the variance of regression estimators from repeated measures studies.
+\newblock \emph{Communications in Statistics - Theory and Methods}, 19\penalty0 (3):\penalty0 821--845, 1990.
 
-\bibitem[Machin et~al.(1988)Machin, Farley, Busca, Campbell, and
-  d'Arcangues]{MFBC88}
+\bibitem[Machin et~al.(1988)Machin, Farley, Busca, Campbell, and d'Arcangues]{MFBC88}
 D.~Machin, T.~Farley, B.~Busca, M.~Campbell, and C.~d'Arcangues.
-\newblock Assessing changes in vaginal bleeding patterns in contracepting
-  women.
+\newblock Assessing changes in vaginal bleeding patterns in contracepting women.
 \newblock \emph{Contraception}, 38:\penalty0 165--179, 1988.
 
-\bibitem[Maechler et~al.(2022)Maechler, Rousseeuw, Croux, Todorov, Ruckstuhl,
-  Salibian-Barrera, Verbeke, Koller, Conceicao, and {Anna di Palma}]{MRCTR22}
-M.~Maechler, P.~Rousseeuw, C.~Croux, V.~Todorov, A.~Ruckstuhl,
-  M.~Salibian-Barrera, T.~Verbeke, M.~Koller, E.~L.~T. Conceicao, and M.~{Anna
-  di Palma}.
+\bibitem[Maechler et~al.(2022)Maechler, Rousseeuw, Croux, Todorov, Ruckstuhl, Salibian-Barrera, Verbeke, Koller, Conceicao, and {Anna di Palma}]{MRCTR22}
+M.~Maechler, P.~Rousseeuw, C.~Croux, V.~Todorov, A.~Ruckstuhl, M.~Salibian-Barrera, T.~Verbeke, M.~Koller, E.~L.~T. Conceicao, and M.~{Anna di Palma}.
 \newblock \emph{robustbase: Basic Robust Statistics}, 2022.
 \newblock R package version 0.95-0.
 
@@ -161,17 +134,14 @@ L.~Mancl and T.~DeRouen.
 \bibitem[McCullagh and Nelder(1989)]{MN89}
 P.~McCullagh and J.~Nelder.
 \newblock \emph{Generalized Linear Models, Second Edition}.
-\newblock Chapman and Hall/CRC Monographs on Statistics and Applied Probability
-  Series. Chapman \& Hall, 1989.
+\newblock Chapman and Hall/CRC Monographs on Statistics and Applied Probability Series. Chapman \& Hall, 1989.
 \newblock URL \url{http://books.google.com/books?id=h9kFH2\_FfBkC}.
 
 \bibitem[McDaniel et~al.(2013)McDaniel, Henderson, and Rathouz]{MNHR13}
 L.~McDaniel, N.~Henderson, and P.~Rathouz.
-\newblock Fast pure {R} implementation of {GEE}: application of the {M}atrix
-  package.
+\newblock Fast pure {R} implementation of {GEE}: application of the {M}atrix package.
 \newblock \emph{The {R} Journal}, 5:\penalty0 181--187, 2013.
-\newblock URL
-  \url{https://journal.r-project.org/archive/2013-1/mcdaniel-henderson-rathouz.pdf}.
+\newblock URL \url{https://journal.r-project.org/archive/2013-1/mcdaniel-henderson-rathouz.pdf}.
 
 \bibitem[Pan(2001)]{P01}
 W.~Pan.
@@ -182,8 +152,7 @@ W.~Pan.
 \bibitem[Pardo and Alonso(2019)]{PA19}
 M.~C. Pardo and R.~Alonso.
 \newblock Working correlation structure selection in gee analysis.
-\newblock \emph{Statistical Papers}, 60\penalty0 (5):\penalty0 1447–1467,
-  2019.
+\newblock \emph{Statistical Papers}, 60\penalty0 (5):\penalty0 1447–1467, 2019.
 \newblock URL \url{https://doi.org/10.1007/s00362-017-0881-0}.
 
 \bibitem[Pinheiro and Bates(2000)]{PB00}
@@ -206,36 +175,29 @@ J.~Preisser and B.~Qaqish.
 
 \bibitem[Preisser et~al.(2002)Preisser, Lohman, and Rathouz]{PLR02}
 J.~Preisser, K.~Lohman, and P.~Rathouz.
-\newblock Performance of weighted estimating equations for longitudinal binary
-  data with drop-outs missing at random.
+\newblock Performance of weighted estimating equations for longitudinal binary data with drop-outs missing at random.
 \newblock \emph{Statistics in Medicine}, 21:\penalty0 3035--3054, 2002.
 
 \bibitem[Robins et~al.(1995)Robins, Rotnitzky, and Zhao]{RRZ95}
 J.~Robins, A.~Rotnitzky, and L.~Zhao.
-\newblock Analysis of semiparametric regression models for repeated outcomes in
-  the presence of missing data.
-\newblock \emph{Journal of the American Statistical Association}, 90:\penalty0
-  122--129, 1995.
+\newblock Analysis of semiparametric regression models for repeated outcomes in the presence of missing data.
+\newblock \emph{Journal of the American Statistical Association}, 90:\penalty0 122--129, 1995.
 
 \bibitem[Rotnitzky and Jewell(1990)]{RJ90}
 A.~Rotnitzky and N.~Jewell.
-\newblock Hypothesis testing of regression parameters in semiparametric
-  generalized linear models for cluster correlated data.
+\newblock Hypothesis testing of regression parameters in semiparametric generalized linear models for cluster correlated data.
 \newblock \emph{Biometrika}, 77\penalty0 (3):\penalty0 485--497, 1990.
 \newblock URL \url{http://www.jstor.org/stable/2336986}.
 
 \bibitem[Wedderburn(1974)]{W74}
 R.~Wedderburn.
-\newblock Quasi-likelihood functions, generalized linear models, and the
-  gauss—newton method.
+\newblock Quasi-likelihood functions, generalized linear models, and the gauss—newton method.
 \newblock \emph{Biometrika}, 61\penalty0 (3):\penalty0 439--447, 1974.
 
 \bibitem[Xu et~al.(2019)Xu, Zhang, and Fu]{XZF19}
 J.~Xu, J.~Zhang, and L.~Fu.
-\newblock Variable selection in generalized estimating equations via empirical
-  likelihood and gaussian pseudo-likelihood.
-\newblock \emph{Communications in Statistics - Simulation and Computation},
-  48\penalty0 (4):\penalty0 1239--1250, 2019.
+\newblock Variable selection in generalized estimating equations via empirical likelihood and gaussian pseudo-likelihood.
+\newblock \emph{Communications in Statistics - Simulation and Computation}, 48\penalty0 (4):\penalty0 1239--1250, 2019.
 
 \bibitem[Yan(2002)]{Yan02}
 J.~Yan.
@@ -244,17 +206,13 @@ J.~Yan.
 
 \bibitem[Zeileis and Croissant(2010)]{Z10}
 A.~Zeileis and Y.~Croissant.
-\newblock Extended model formulas in {R}: Multiple parts and multiple
-  responses.
-\newblock \emph{Journal of Statistical Software}, 34\penalty0 (1):\penalty0
-  1--13, 2010.
+\newblock Extended model formulas in {R}: Multiple parts and multiple responses.
+\newblock \emph{Journal of Statistical Software}, 34\penalty0 (1):\penalty0 1--13, 2010.
 \newblock \doi{10.18637/jss.v034.i01}.
 
 \bibitem[Zhu and Zhu(2013)]{ZZ13}
 X.~Zhu and Z.~Zhu.
-\newblock Comparison of criteria to select working correlation matrix in
-  generalized estimating equations.
-\newblock \emph{Chinese Journal of applied probability and statistics},
-  5:\penalty0 515--30, 2013.
+\newblock Comparison of criteria to select working correlation matrix in generalized estimating equations.
+\newblock \emph{Chinese Journal of applied probability and statistics}, 5:\penalty0 515--30, 2013.
 
 \end{thebibliography}