pasta/requirements.txt at main · robinsonlabuzh/pasta · GitHub

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aiobotocore==2.21.1
aiohappyeyeballs==2.6.1
aiohttp==3.11.18
aioitertools==0.12.0
aiosignal==1.3.2
anndata==0.11.4
annoy==1.17.3
array_api_compat==1.11.2
asciitree==0.3.3
async-timeout==5.0.1
attrs==25.3.0
beautifulsoup4==4.13.4
botocore==1.37.1
certifi==2025.4.26
charset-normalizer==3.4.1
click==8.1.8
cloudpickle==3.1.1
colorcet==3.1.0
contourpy==1.3.2
cycler==0.12.1
dask==2024.11.2
dask-expr==1.1.19
dask-image==2024.5.3
datashader==0.18.0
docrep==0.3.2
esda==2.7.0
exceptiongroup==1.2.2
fasteners==0.19
fonttools==4.57.0
frozenlist==1.6.0
fsspec==2025.3.2
geopandas==1.0.1
h5py==3.13.0
idna==3.10
igraph==0.11.8
imageio==2.37.0
importlib_metadata==8.7.0
inflect==7.5.0
jmespath==1.0.1
joblib==1.4.2
kiwisolver==1.4.8
lazy_loader==0.4
legacy-api-wrap==1.4.1
libpysal==4.13.0
llvmlite==0.44.0
locket==1.0.0
markdown-it-py==3.0.0
matplotlib==3.9.3
matplotlib-scalebar==0.9.0
mdurl==0.1.2
more-itertools==10.7.0
multidict==6.4.3
multipledispatch==1.0.0
multiscale_spatial_image #==2.0.2
natsort==8.4.0
networkx==3.4.2
numba==0.61.2
numcodecs==0.13.1
numpy==2.2.5
ome-zarr==0.11.1
omnipath==1.0.9
packaging==25.0
pandas==2.2.3
param==2.2.0
partd==1.4.2
patsy==1.0.1
pillow==11.2.1
PIMS==0.7
platformdirs==4.3.7
pooch==1.8.2
propcache==0.3.1
pyarrow==20.0.0
pyct==0.5.0
Pygments==2.19.1
pynndescent==0.5.13
pyogrio==0.10.0
pyparsing==3.2.3
pyproj==3.7.1
python-dateutil==2.9.0.post0
pytz==2025.2
PyYAML==6.0.2
requests==2.32.4
rich==14.0.0
s3fs==2025.3.2
scanpy==1.11.1
scikit-image==0.25.2
scikit-learn==1.5.2
scikit-misc==0.5.1
scipy==1.15.2
seaborn==0.13.2
session-info2==0.1.2
shapely==2.1.0
six==1.17.0
# sklearn-ann==0.1.2
slicerator==1.1.0
soupsieve==2.7
spatial_image==1.2.1
spatialdata==0.4.0
squidpy==1.6.5
statsmodels==0.14.4
texttable==1.7.0
threadpoolctl==3.6.0
tifffile==2025.3.30
toolz==1.0.0
tqdm==4.67.1
typeguard==4.4.2
typing_extensions==4.13.2
tzdata==2025.2
umap-learn==0.5.7
urllib3==2.4.0
validators==0.34.0
wrapt==1.17.2
xarray==2024.11.0
xarray-dataclasses==1.9.1
xarray-schema==0.0.3
xarray-spatial==0.4.0
yarl==1.20.0
zarr==2.18.3
zipp==3.21.0