Merge pull request #646 from ropensci/cran_release

rgbif 3.7.7 skipping organizations test on CRAN

Author: jhnwllr

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 3.7.5
-Date: 2022-12-30 19:48:23 UTC
-SHA: 4847634fd2dd0a94e55129cf1b37e5debba4f3d7
+Version: 3.7.6
+Date: 2023-03-23 09:30:49 UTC
+SHA: cf0ad2747d6a58cf67357b169517317edd2e1a66

DESCRIPTION

@@ -8,7 +8,7 @@ Description: A programmatic interface to the Web Service methods
     retrieving information on data providers, getting species occurrence
     records, getting counts of occurrence records, and using the GBIF
     tile map service to make rasters summarizing huge amounts of data.
-Version: 3.7.6
+Version: 3.7.7
 License: MIT + file LICENSE
 Authors@R: c(
     person("Scott", "Chamberlain", role = "aut", comment = c(ORCID="0000-0003-1444-9135")),

NEWS.md

@@ -1,3 +1,9 @@
+rgbif 3.7.7
+===========
+
+### MINOR IMPROVEMENTS
+* Fixes test that was causing errors on CRAN. 
+
 rgbif 3.7.6
 ===========
 

codemeta.json

@@ -8,13 +8,13 @@
   "codeRepository": "https://github.com/ropensci/rgbif",
   "issueTracker": "https://github.com/ropensci/rgbif/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "3.7.6",
+  "version": "3.7.7",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 4.2.2 (2022-10-31 ucrt)",
+  "runtimePlatform": "R version 4.2.3 (2023-03-15 ucrt)",
   "provider": {
     "@id": "https://cran.r-project.org",
     "@type": "Organization",
@@ -346,7 +346,7 @@
   "applicationCategory": "Biodiversity",
   "isPartOf": "https://ropensci.org",
   "keywords": ["GBIF", "specimens", "API", "web-services", "occurrences", "species", "taxonomy", "gbif", "api", "data", "biodiversity", "rstats", "r", "spocc", "r-package", "lifewatch", "oscibio"],
-  "fileSize": "12364.127KB",
+  "fileSize": "12483.103KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -390,7 +390,7 @@
       ],
       "name": "rgbif: Interface to the Global Biodiversity Information Facility API",
       "url": "https://CRAN.R-project.org/package=rgbif",
-      "description": "R package version 3.7.6"
+      "description": "R package version 3.7.7"
     },
     {
       "@type": "ScholarlyArticle",

cran-comments.md

@@ -1,9 +1,9 @@
 ## Test environments
 
-* local windows, R 4.2.2
-* windows latest R 4.2.2 (GitHub Actions)
-* ubuntu 20.04, R 4.2.2 (GitHub Actions)
-* macOS latest, R 4.2.2 (GitHub Actions)
+* local windows, R 4.2.3
+* windows latest R 4.2.3 (GitHub Actions)
+* ubuntu 20.04, R 4.2.3 (GitHub Actions)
+* macOS latest, R 4.2.3 (GitHub Actions)
 
 ## R CMD check results
 

tests/fixtures/dataset_metrics.yml

@@ -20,8 +20,8 @@ http_interactions:
       encoding: ''
       file: no
       string: '{"key":1806059,"datasetKey":"863e6d6b-f602-4495-ac30-881482b6f799","usagesCount":7,"synonymsCount":0,"distinctNamesCount":7,"nubMatchingCount":7,"colMatchingCount":6,"nubCoveragePct":100,"colCoveragePct":85,"countByConstituent":{},"countByKingdom":{"ANIMALIA":7},"countByRank":{"KINGDOM":1,"PHYLUM":1,"CLASS":1,"ORDER":1,"FAMILY":1,"GENUS":1,"SPECIES":1},"countNamesByLanguage":{},"countExtRecordsByExtension":{"DESCRIPTION":7,"DISTRIBUTION":0,"IDENTIFIER":0,"MULTIMEDIA":0,"REFERENCE":0,"SPECIES_PROFILE":0,"TYPES_AND_SPECIMEN":0,"VERNACULAR_NAME":0},"countByOrigin":{"DENORMED_CLASSIFICATION":6,"SOURCE":1},"countByIssue":{"NOMENCLATURAL_STATUS_INVALID":1},"otherCount":{},"downloaded":"2022-12-09T11:32:03.702+00:00"}'
-  recorded_at: 2023-03-22 11:30:52 GMT
-  recorded_with: vcr/1.2.0, webmockr/0.8.2
+  recorded_at: 2023-04-03 08:52:28 GMT
+  recorded_with: vcr/1.2.0, webmockr/0.9.0
 - request:
     method: get
     uri: https://api.gbif.org/v1/dataset/863e6d6b-f602-4495-ac30-881482b6f799/metrics
@@ -43,8 +43,8 @@ http_interactions:
       encoding: ''
       file: no
       string: '{"key":1806059,"datasetKey":"863e6d6b-f602-4495-ac30-881482b6f799","usagesCount":7,"synonymsCount":0,"distinctNamesCount":7,"nubMatchingCount":7,"colMatchingCount":6,"nubCoveragePct":100,"colCoveragePct":85,"countByConstituent":{},"countByKingdom":{"ANIMALIA":7},"countByRank":{"KINGDOM":1,"PHYLUM":1,"CLASS":1,"ORDER":1,"FAMILY":1,"GENUS":1,"SPECIES":1},"countNamesByLanguage":{},"countExtRecordsByExtension":{"DESCRIPTION":7,"DISTRIBUTION":0,"IDENTIFIER":0,"MULTIMEDIA":0,"REFERENCE":0,"SPECIES_PROFILE":0,"TYPES_AND_SPECIMEN":0,"VERNACULAR_NAME":0},"countByOrigin":{"DENORMED_CLASSIFICATION":6,"SOURCE":1},"countByIssue":{"NOMENCLATURAL_STATUS_INVALID":1},"otherCount":{},"downloaded":"2022-12-09T11:32:03.702+00:00"}'
-  recorded_at: 2023-03-22 11:30:52 GMT
-  recorded_with: vcr/1.2.0, webmockr/0.8.2
+  recorded_at: 2023-04-03 08:52:28 GMT
+  recorded_with: vcr/1.2.0, webmockr/0.9.0
 - request:
     method: get
     uri: https://api.gbif.org/v1/dataset/66dd0960-2d7d-46ee-a491-87b9adcfe7b1/metrics
@@ -66,5 +66,5 @@ http_interactions:
       encoding: ''
       file: no
       string: '{"key":1809611,"datasetKey":"66dd0960-2d7d-46ee-a491-87b9adcfe7b1","usagesCount":138248,"synonymsCount":59906,"distinctNamesCount":138122,"nubMatchingCount":131965,"colMatchingCount":116603,"nubCoveragePct":95,"colCoveragePct":84,"countByConstituent":{},"countByKingdom":{"PLANTAE":72437,"INCERTAE_SEDIS":17},"countByRank":{"SPECIES":52563,"GENUS":12880,"VARIETY":4810,"SUBSPECIES":4462,"SERIES":1077,"TRIBE":844,"FAMILY":509,"SUBTRIBE":327,"SUBFAMILY":303,"SUBGENUS":240,"FORM":238,"SECTION":82,"SUBVARIETY":5,"KINGDOM":1},"countNamesByLanguage":{"ENGLISH":32165,"SWEDISH":7284,"GERMAN":4882,"SPANISH":4157,"FRENCH":3783,"PORTUGUESE":1141,"ITALIAN":663,"AFRIKAANS":450,"ARABIC":182,"INDONESIAN":153,"MALAY":139,"SWAHILI":72,"DUTCH":50,"MALAGASY":41,"DANISH":21,"FIJIAN":17,"HINDI":15,"SOMALI":11,"TURKISH":8,"NEPALI":7,"POLISH":7,"CZECH":4,"KOREAN":4,"TAJIK":4,"CATALAN":3,"FINNISH":3,"JAVANESE":3,"ROMANIAN":3,"VIETNAMESE":3,"YORUBA":3,"AYMARA":2,"CHINESE":2,"SAMOAN":2,"ALBANIAN":1,"BISLAMA":1,"HUNGARIAN":1,"LAO":1,"MONGOLIAN":1,"NORWEGIAN":1,"QUECHUA":1,"RUSSIAN":1,"SANSKRIT":1,"TAMIL":1,"THAI":1,"TONGA":1,"TURKMEN":1},"countExtRecordsByExtension":{"VERNACULAR_NAME":64900,"DESCRIPTION":0,"DISTRIBUTION":0,"IDENTIFIER":0,"MULTIMEDIA":0,"REFERENCE":0,"SPECIES_PROFILE":0,"TYPES_AND_SPECIMEN":0},"countByOrigin":{"SOURCE":138246,"DENORMED_CLASSIFICATION":1,"MISSING_ACCEPTED":1},"countByIssue":{"SCIENTIFIC_NAME_ASSEMBLED":128661,"BACKBONE_MATCH_NONE":6283,"VERNACULAR_NAME_INVALID":5501,"CHAINED_SYNOYM":522,"PARENT_NAME_USAGE_ID_INVALID":48,"PARTIALLY_PARSABLE":7,"PARENT_CYCLE":1},"otherCount":{},"downloaded":"2023-01-22T18:36:41.107+00:00"}'
-  recorded_at: 2023-03-22 11:30:52 GMT
-  recorded_with: vcr/1.2.0, webmockr/0.8.2
+  recorded_at: 2023-04-03 08:52:28 GMT
+  recorded_with: vcr/1.2.0, webmockr/0.9.0

tests/fixtures/dataset_metrics_error.yml

@@ -19,8 +19,8 @@ http_interactions:
       encoding: ''
       file: no
       string: ''
-  recorded_at: 2023-03-22 11:30:53 GMT
-  recorded_with: vcr/1.2.0, webmockr/0.8.2
+  recorded_at: 2023-04-03 08:52:28 GMT
+  recorded_with: vcr/1.2.0, webmockr/0.9.0
 - request:
     method: get
     uri: https://api.gbif.org/v1/dataset/3f8a1297-3259-4700-91fc-acc4170b27ce/metrics
@@ -42,8 +42,8 @@ http_interactions:
       encoding: ''
       file: no
       string: '{"key":1807427,"datasetKey":"3f8a1297-3259-4700-91fc-acc4170b27ce","usagesCount":32563,"synonymsCount":21947,"distinctNamesCount":32529,"nubMatchingCount":31067,"colMatchingCount":25726,"nubCoveragePct":95,"colCoveragePct":79,"countByConstituent":{},"countByKingdom":{"PLANTAE":9281},"countByRank":{"SPECIES":6239,"GENUS":1275,"VARIETY":909,"SUBSPECIES":723,"SECTION":411,"TRIBE":341,"FAMILY":177,"SUBFAMILY":159,"SUBGENUS":115,"SUBSECTION":73,"SUBTRIBE":68,"ORDER":56,"SERIES":50,"SUPERORDER":13,"SUBCLASS":6,"CLASS":1},"countNamesByLanguage":{"ENGLISH":20983,"FRENCH":11566},"countExtRecordsByExtension":{"VERNACULAR_NAME":32549,"DISTRIBUTION":29861,"DESCRIPTION":10609,"IDENTIFIER":0,"MULTIMEDIA":0,"REFERENCE":0,"SPECIES_PROFILE":0,"TYPES_AND_SPECIMEN":0},"countByOrigin":{"SOURCE":32552,"PROPARTE":11},"countByIssue":{"SCIENTIFIC_NAME_ASSEMBLED":1919,"BACKBONE_MATCH_NONE":1496,"PARTIALLY_PARSABLE":51,"UNPARSABLE":3},"otherCount":{},"downloaded":"2022-12-20T14:07:48.320+00:00"}'
-  recorded_at: 2023-03-22 11:30:53 GMT
-  recorded_with: vcr/1.2.0, webmockr/0.8.2
+  recorded_at: 2023-04-03 08:52:28 GMT
+  recorded_with: vcr/1.2.0, webmockr/0.9.0
 - request:
     method: get
     uri: https://api.gbif.org/v1/dataset/4/metrics
@@ -65,8 +65,8 @@ http_interactions:
       encoding: ''
       file: no
       string: 'Invalid UUID string: 4'
-  recorded_at: 2023-03-22 11:30:53 GMT
-  recorded_with: vcr/1.2.0, webmockr/0.8.2
+  recorded_at: 2023-04-03 08:52:28 GMT
+  recorded_with: vcr/1.2.0, webmockr/0.9.0
 - request:
     method: get
     uri: https://api.gbif.org/v1/dataset/82ceb6ba-f762-11e1-a439-00145eb45e9a/metrics
@@ -87,7 +87,7 @@ http_interactions:
     body:
       encoding: ''
       file: no
-      string: '{"timestamp":"2023-03-22T11:30:53.595+00:00","status":404,"error":"","message":"Entity
+      string: '{"timestamp":"2023-04-03T08:52:30.914+00:00","status":404,"error":"","message":"Entity
         not found for uri: /dataset/82ceb6ba-f762-11e1-a439-00145eb45e9a/metrics"}'
-  recorded_at: 2023-03-22 11:30:53 GMT
-  recorded_with: vcr/1.2.0, webmockr/0.8.2
+  recorded_at: 2023-04-03 08:52:28 GMT
+  recorded_with: vcr/1.2.0, webmockr/0.9.0