Added missing fix ground truth matches statement (#207)

* added missing fix ground truth matches statement

* pin numcodecs because of zarr v2

Author: JoOkuma

pyproject.toml

@@ -27,6 +27,7 @@ dependencies = [
     "mip >=1.16rc0",
     "napari >=0.4.18",
     "numba >=0.57.0",
+    "numcodecs <0.16.0",  # required by zarr<3  https://github.com/zarr-developers/zarr-python/issues/2963
     "ome-zarr >= 0.9.0",
     "pandas >=2.0.1",
     "pillow >=10.0.0",

ultrack/core/solve/sqltracking.py

@@ -118,6 +118,9 @@ def __call__(
         if use_annotations:
             print("Fixing annotations ...")
             self.fix_annotations(index)
+        elif use_ground_truth_match:
+            print("Fixing ground truth matches ...")
+            self.fix_ground_truth_matches(index)
 
         print("Solving ILP ...")
         self.solve()