Removing usage of deprecated TempStore (#249)

* removing usage of deprecated TempStore

* updating pre-commit

* fixing pixi

* fixing linting

Author: JoOkuma

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 repos:
 # basic pre-commit
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v6.0.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
@@ -17,25 +17,25 @@ repos:
       - id: absolufy-imports
 # sorting imports
   - repo: https://github.com/pycqa/isort
-    rev: 5.13.2
+    rev: 7.0.0
     hooks:
       - id: isort
         args: ["--profile", "black", "--filter-files"]
 # automatic upgrade to newer python versions syntax
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.17.0
+    rev: v3.21.2
     hooks:
       - id: pyupgrade
         args: ["--py38-plus", "--keep-runtime-typing"]
 # syntax linting and formatting
-  - repo: https://github.com/PyCQA/autoflake
+  - repo: https://github.com/myint/autoflake
     rev: v2.3.1
     hooks:
       - id: autoflake
         args: [--in-place, --remove-all-unused-imports,
                --ignore-init-module-imports]
   - repo: https://github.com/PyCQA/flake8
-    rev: 7.1.1
+    rev: 7.3.0
     hooks:
       - id: flake8
         args: [--max-line-length, '120',
@@ -45,7 +45,7 @@ repos:
                --min-python-version, '3.9']
         additional_dependencies: [flake8-typing-imports==1.12.0]
   - repo: https://github.com/psf/black
-    rev: 24.8.0
+    rev: 25.11.0
     hooks:
       - id: black
 

pyproject.toml

@@ -99,7 +99,7 @@ ultrack = "ultrack.cli.main:main"
 ultrack = "ultrack:napari.yaml"
 
 # pixi config
-[tool.pixi.project]
+[tool.pixi.workspace]
 channels = ["conda-forge", "nvidia", "pytorch", "numba", "gurobi"]
 platforms = ["linux-64", "win-64", "osx-64"]
 preview = ["pixi-build"]  # required to use git links

ultrack/widgets/ultrackwidget/workflows.py

@@ -5,7 +5,6 @@
 import napari
 import numpy as np
 import pandas as pd
-import zarr
 from napari.layers import Image, Labels, Layer, Tracks
 from napari.types import ArrayLike
 
@@ -553,19 +552,14 @@ def _create_temp_detection_and_contours(
     Tuple[ArrayLike, ArrayLike]
         The paths to the temporary detection and contours arrays.
     """
-    detection_store = zarr.TempStore(suffix="detection")
-    contours_store = zarr.TempStore(suffix="contours")
-
     zarr_detection = create_zarr(
         shape=shape,
         dtype=bool,
-        store_or_path=detection_store,
         overwrite=True,
     )
     zarr_contours = create_zarr(
         shape=shape,
         dtype=np.float16,
-        store_or_path=contours_store,
         overwrite=True,
     )