comet update v0.3.7 breaks /comet slash command — symlink targets missing

[pioneerAlone]

Description

After running comet update to v0.3.7, the /comet slash command is no longer available in Claude Code. comet doctor reports all 16 IDE targets as "missing 16" skill files.

Root Cause

The symlinks in ~/.claude/skills/ point to ~/.agents/skills/comet*, but the target directories don't exist:

$ ls -la ~/.claude/skills/ | grep comet
lrwxr-xr-x  comet -> ../../.agents/skills/comet          ← symlink exists
lrwxr-xr-x  comet-open -> ../../.agents/skills/comet-open  ← symlink exists
...

$ ls ~/.agents/skills/comet/
ls: No such file or directory                              ← target missing

All 8 comet skill directories (comet, comet-open, comet-build, comet-design, comet-verify, comet-archive, comet-hotfix, comet-tweak) have broken symlinks — the target ~/.agents/skills/comet* directories do not exist.

Steps to Reproduce

1. Have an existing comet installation using the symlink model (~/.claude/skills/comet* → ~/.agents/skills/comet*)
2. Run comet update
3. Output shows "Copying 16 skill files..." successfully
4. Run comet doctor — all 16 targets show "missing 16"
5. /comet slash command not available in Claude Code

System Info

• OS: macOS 14.4.1 (Darwin 23.4.0, Apple Silicon arm64)
• Node: v25.2.1
• npm: 11.6.2
• Comet: v0.3.7
• openspec CLI: 1.3.1
• Claude Code: global scope

comet update Output

Comet Update v0.3.7

Updating npm package (global scope)...
  $ npm install -g @rpamis/comet@latest
npm package: updated to latest @rpamis/comet

Updating comet skills on 16 installed target(s):
  - Claude Code (global, en)
    $ copy assets/skills -> ~/.claude/skills/ (global)
  ... (16 targets listed)

Copying 16 skill files...
Comet skill files updated.
Run 'comet doctor' to verify.

comet doctor Output (key excerpt)

✗ working directories: missing — run: comet init
⚠ skills: Claude Code (global): missing 16: comet/SKILL.md, 
  comet/reference/dirty-worktree.md, comet/scripts/comet-env.sh, 
  comet/scripts/comet-guard.sh, comet/scripts/comet-state.sh, 
  comet/scripts/comet-handoff.sh, comet/scripts/comet-archive.sh, 
  comet/scripts/comet-yaml-validate.sh, comet/scripts/comet-hook-guard.sh, 
  comet-open/SKILL.md, comet-design/SKILL.md, comet-build/SKILL.md, 
  comet-verify/SKILL.md, comet-archive/SKILL.md, comet-hotfix/SKILL.md, 
  comet-tweak/SKILL.md
✓ scripts executable: OK (7 scripts)

Same "missing 16" warning repeats for all 16 IDE targets.

Expected Behavior

comet update should either:

• Copy skill files to the symlink target directories (~/.agents/skills/comet*)
• Or recreate the symlinks to point to the correct location where the files were copied

comet doctor should show all skills as present across all targets.