Skip to content

Commit 4bd4d68

Browse files
vsochvsoch
authored
Merge pull request #442 from rseng/update/software-2025-09-28
Update from update/software-2025-09-28
2 parents ad0785d + c5b70ff commit 4bd4d68

File tree

161 files changed

+107868
-89168
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

161 files changed

+107868
-89168
lines changed

‎database/github/Arpitk1001/RotCurveTool/metadata.json‎

Lines changed: 34 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,34 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/Arpitk1001/RotCurveTool",
4+
"url": "https://github.com/Arpitk1001/RotCurveTool",
5+
"data": {
6+
"doi": [],
7+
"title": "RotCurveTool: A Streamlined Framework for Simulating and Fitting Galactic Rotation Curves",
8+
"url": "https://github.com/Arpitk1001/RotCurveTool",
9+
"name": "RotCurveTool",
10+
"full_name": "Arpitk1001/RotCurveTool",
11+
"html_url": "https://github.com/Arpitk1001/RotCurveTool",
12+
"description": "A streamlined Python-based tool for simulating and fitting galactic rotation curves using modular mass models and statistical inference.",
13+
"created_at": "2025-07-26T07:25:02Z",
14+
"updated_at": "2025-07-26T09:56:22Z",
15+
"clone_url": "https://github.com/Arpitk1001/RotCurveTool.git",
16+
"size": 2811,
17+
"language": "Jupyter Notebook",
18+
"license": {
19+
"key": "mit",
20+
"name": "MIT License",
21+
"spdx_id": "MIT",
22+
"url": "https://api.github.com/licenses/mit",
23+
"node_id": "MDc6TGljZW5zZTEz"
24+
},
25+
"owner": {
26+
"html_url": "https://github.com/Arpitk1001",
27+
"avatar_url": "https://avatars.githubusercontent.com/u/212198082?v=4",
28+
"login": "Arpitk1001",
29+
"type": "User"
30+
},
31+
"timestamp": "2025-09-28 00:56:52.405097",
32+
"avatar": "https://avatars.githubusercontent.com/u/212198082?v=4"
33+
}
34+
}

‎database/github/Baohua-Chen/GFFx/metadata.json‎

Lines changed: 36 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,36 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/Baohua-Chen/GFFx",
4+
"url": "https://github.com/Baohua-Chen/GFFx",
5+
"data": {
6+
"doi": "10.1101/2025.08.08.669426",
7+
"name": "GFFx",
8+
"url": "https://github.com/Baohua-Chen/GFFx",
9+
"full_name": "Baohua-Chen/GFFx",
10+
"html_url": "https://github.com/Baohua-Chen/GFFx",
11+
"description": "A Rust-Based suite of utilities for ultra-fast genomic feature extraction",
12+
"created_at": "2025-07-09T09:33:33Z",
13+
"updated_at": "2025-09-18T13:56:47Z",
14+
"clone_url": "https://github.com/Baohua-Chen/GFFx.git",
15+
"size": 47672,
16+
"stargazers_count": 20,
17+
"watchers_count": 20,
18+
"language": "Rust",
19+
"license": {
20+
"key": "apache-2.0",
21+
"name": "Apache License 2.0",
22+
"spdx_id": "Apache-2.0",
23+
"url": "https://api.github.com/licenses/apache-2.0",
24+
"node_id": "MDc6TGljZW5zZTI="
25+
},
26+
"subscribers_count": 1,
27+
"owner": {
28+
"html_url": "https://github.com/Baohua-Chen",
29+
"avatar_url": "https://avatars.githubusercontent.com/u/52615906?v=4",
30+
"login": "Baohua-Chen",
31+
"type": "User"
32+
},
33+
"timestamp": "2025-09-28 00:57:53.092745",
34+
"avatar": "https://avatars.githubusercontent.com/u/52615906?v=4"
35+
}
36+
}

‎database/github/ChristopheBerthod/Piecewise.jl/metadata.json‎

Lines changed: 33 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,33 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/ChristopheBerthod/Piecewise.jl",
4+
"url": "https://github.com/ChristopheBerthod/Piecewise.jl",
5+
"data": {
6+
"doi": "https://doi.org/10.5281/zenodo.17016438",
7+
"name": "Piecewise.jl",
8+
"url": "https://github.com/ChristopheBerthod/Piecewise.jl",
9+
"full_name": "ChristopheBerthod/Piecewise.jl",
10+
"html_url": "https://github.com/ChristopheBerthod/Piecewise.jl",
11+
"created_at": "2025-02-12T05:23:31Z",
12+
"updated_at": "2025-09-22T20:38:54Z",
13+
"clone_url": "https://github.com/ChristopheBerthod/Piecewise.jl.git",
14+
"size": 5118,
15+
"language": "Jupyter Notebook",
16+
"license": {
17+
"key": "mit",
18+
"name": "MIT License",
19+
"spdx_id": "MIT",
20+
"url": "https://api.github.com/licenses/mit",
21+
"node_id": "MDc6TGljZW5zZTEz"
22+
},
23+
"subscribers_count": 1,
24+
"owner": {
25+
"html_url": "https://github.com/ChristopheBerthod",
26+
"avatar_url": "https://avatars.githubusercontent.com/u/36079222?v=4",
27+
"login": "ChristopheBerthod",
28+
"type": "User"
29+
},
30+
"timestamp": "2025-09-28 00:57:23.739642",
31+
"avatar": "https://avatars.githubusercontent.com/u/36079222?v=4"
32+
}
33+
}

‎database/github/Climdyn/auto-AUTO/metadata.json‎

Lines changed: 37 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,37 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/Climdyn/auto-AUTO",
4+
"url": "https://github.com/Climdyn/auto-AUTO",
5+
"data": {
6+
"doi": "https://doi.org/10.5281/zenodo.17182449",
7+
"name": "auto-AUTO",
8+
"url": "https://github.com/Climdyn/auto-AUTO",
9+
"full_name": "Climdyn/auto-AUTO",
10+
"html_url": "https://github.com/Climdyn/auto-AUTO",
11+
"description": "An AUTO-07p automatic search algorithm codebase",
12+
"created_at": "2024-06-17T08:45:15Z",
13+
"updated_at": "2025-08-25T08:46:22Z",
14+
"clone_url": "https://github.com/Climdyn/auto-AUTO.git",
15+
"size": 6676,
16+
"stargazers_count": 4,
17+
"watchers_count": 4,
18+
"language": "Python",
19+
"open_issues_count": 5,
20+
"license": {
21+
"key": "mit",
22+
"name": "MIT License",
23+
"spdx_id": "MIT",
24+
"url": "https://api.github.com/licenses/mit",
25+
"node_id": "MDc6TGljZW5zZTEz"
26+
},
27+
"subscribers_count": 1,
28+
"owner": {
29+
"html_url": "https://github.com/Climdyn",
30+
"avatar_url": "https://avatars.githubusercontent.com/u/17494336?v=4",
31+
"login": "Climdyn",
32+
"type": "Organization"
33+
},
34+
"timestamp": "2025-09-28 00:57:16.913478",
35+
"avatar": "https://avatars.githubusercontent.com/u/17494336?v=4"
36+
}
37+
}

‎database/github/DyHealthNet/NApy/metadata.json‎

Lines changed: 35 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,35 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/DyHealthNet/NApy",
4+
"url": "https://github.com/DyHealthNet/NApy",
5+
"data": {
6+
"doi": "10.48550/arXiv.2505.00448",
7+
"name": "NApy",
8+
"url": "https://github.com/DyHealthNet/NApy",
9+
"full_name": "DyHealthNet/NApy",
10+
"html_url": "https://github.com/DyHealthNet/NApy",
11+
"description": "NApy: Efficient Statistics in Python for Large-Scale Heterogeneous Data with Enhanced Support for Missing Data",
12+
"created_at": "2025-01-23T07:49:29Z",
13+
"updated_at": "2025-08-29T14:43:22Z",
14+
"clone_url": "https://github.com/DyHealthNet/NApy.git",
15+
"size": 154,
16+
"stargazers_count": 4,
17+
"watchers_count": 4,
18+
"language": "Python",
19+
"license": {
20+
"key": "gpl-3.0",
21+
"name": "GNU General Public License v3.0",
22+
"spdx_id": "GPL-3.0",
23+
"url": "https://api.github.com/licenses/gpl-3.0",
24+
"node_id": "MDc6TGljZW5zZTk="
25+
},
26+
"owner": {
27+
"html_url": "https://github.com/DyHealthNet",
28+
"avatar_url": "https://avatars.githubusercontent.com/u/160876211?v=4",
29+
"login": "DyHealthNet",
30+
"type": "Organization"
31+
},
32+
"timestamp": "2025-09-28 00:57:48.412968",
33+
"avatar": "https://avatars.githubusercontent.com/u/160876211?v=4"
34+
}
35+
}

‎database/github/Ecogenomics/GTDBTk/metadata.json‎

Lines changed: 53 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,53 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/Ecogenomics/GTDBTk",
4+
"url": "https://github.com/Ecogenomics/GTDBTk",
5+
"data": {
6+
"title": "GTDBTk",
7+
"url": "https://github.com/Ecogenomics/GTDBTk",
8+
"credit": [],
9+
"tags": [
10+
"metagenomic-sequencing-analysis",
11+
"high-throughput-sequencing"
12+
],
13+
"description": "GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.",
14+
"name": "GTDBTk",
15+
"full_name": "Ecogenomics/GTDBTk",
16+
"html_url": "https://github.com/Ecogenomics/GTDBTk",
17+
"created_at": "2016-11-29T05:29:48Z",
18+
"updated_at": "2025-09-23T16:04:13Z",
19+
"clone_url": "https://github.com/Ecogenomics/GTDBTk.git",
20+
"homepage": "https://ecogenomics.github.io/GTDBTk/",
21+
"size": 30557,
22+
"stargazers_count": 543,
23+
"watchers_count": 543,
24+
"language": "Python",
25+
"open_issues_count": 17,
26+
"license": {
27+
"key": "gpl-3.0",
28+
"name": "GNU General Public License v3.0",
29+
"spdx_id": "GPL-3.0",
30+
"url": "https://api.github.com/licenses/gpl-3.0",
31+
"node_id": "MDc6TGljZW5zZTk="
32+
},
33+
"subscribers_count": 20,
34+
"owner": {
35+
"html_url": "https://github.com/Ecogenomics",
36+
"avatar_url": "https://avatars.githubusercontent.com/u/1404161?v=4",
37+
"login": "Ecogenomics",
38+
"type": "Organization"
39+
},
40+
"topics": [
41+
"taxonomy",
42+
"species-assignments",
43+
"phylogenetics",
44+
"archaea",
45+
"bacteria",
46+
"nomenclature",
47+
"bioinformatics",
48+
"metagenomics"
49+
],
50+
"timestamp": "2025-09-28 00:59:48.383773",
51+
"avatar": "https://avatars.githubusercontent.com/u/1404161?v=4"
52+
}
53+
}

‎database/github/Feng-Ji-Lab/FedIRT/metadata.json‎

Lines changed: 35 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,35 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/Feng-Ji-Lab/FedIRT",
4+
"url": "https://github.com/Feng-Ji-Lab/FedIRT",
5+
"data": {
6+
"doi": "https://doi.org/10.5281/zenodo.16691211",
7+
"name": "FedIRT",
8+
"url": "https://github.com/Feng-Ji-Lab/FedIRT",
9+
"full_name": "Feng-Ji-Lab/FedIRT",
10+
"html_url": "https://github.com/Feng-Ji-Lab/FedIRT",
11+
"created_at": "2024-04-04T19:26:29Z",
12+
"updated_at": "2025-08-20T12:58:11Z",
13+
"clone_url": "https://github.com/Feng-Ji-Lab/FedIRT.git",
14+
"size": 9624,
15+
"stargazers_count": 1,
16+
"watchers_count": 1,
17+
"language": "R",
18+
"open_issues_count": 6,
19+
"license": {
20+
"key": "mit",
21+
"name": "MIT License",
22+
"spdx_id": "MIT",
23+
"url": "https://api.github.com/licenses/mit",
24+
"node_id": "MDc6TGljZW5zZTEz"
25+
},
26+
"owner": {
27+
"html_url": "https://github.com/Feng-Ji-Lab",
28+
"avatar_url": "https://avatars.githubusercontent.com/u/166061424?v=4",
29+
"login": "Feng-Ji-Lab",
30+
"type": "Organization"
31+
},
32+
"timestamp": "2025-09-28 00:57:26.340857",
33+
"avatar": "https://avatars.githubusercontent.com/u/166061424?v=4"
34+
}
35+
}

‎database/github/GeoArkadeep/Stresslog/metadata.json‎

Lines changed: 44 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,44 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/GeoArkadeep/Stresslog",
4+
"url": "https://github.com/GeoArkadeep/Stresslog",
5+
"data": {
6+
"doi": "https://doi.org/10.5281/zenodo.17162503",
7+
"name": "Stresslog",
8+
"url": "https://github.com/GeoArkadeep/Stresslog",
9+
"full_name": "GeoArkadeep/Stresslog",
10+
"html_url": "https://github.com/GeoArkadeep/Stresslog",
11+
"description": "Python package to read well logs and model geomechanical properties.",
12+
"created_at": "2024-02-16T22:25:49Z",
13+
"updated_at": "2025-09-27T00:06:18Z",
14+
"clone_url": "https://github.com/GeoArkadeep/Stresslog.git",
15+
"size": 41595,
16+
"stargazers_count": 12,
17+
"watchers_count": 12,
18+
"language": "Python",
19+
"license": {
20+
"key": "agpl-3.0",
21+
"name": "GNU Affero General Public License v3.0",
22+
"spdx_id": "AGPL-3.0",
23+
"url": "https://api.github.com/licenses/agpl-3.0",
24+
"node_id": "MDc6TGljZW5zZTE="
25+
},
26+
"subscribers_count": 1,
27+
"owner": {
28+
"html_url": "https://github.com/GeoArkadeep",
29+
"avatar_url": "https://avatars.githubusercontent.com/u/160126374?v=4",
30+
"login": "GeoArkadeep",
31+
"type": "User"
32+
},
33+
"topics": [
34+
"cross-platform",
35+
"geomechanics",
36+
"las-files",
37+
"pore-pressure-prediction",
38+
"well-logs",
39+
"dlis"
40+
],
41+
"timestamp": "2025-09-28 00:57:18.050224",
42+
"avatar": "https://avatars.githubusercontent.com/u/160126374?v=4"
43+
}
44+
}

‎database/github/JD2112/TwistMethylFlow/metadata.json‎

Lines changed: 46 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/JD2112/TwistMethylFlow",
4+
"url": "https://github.com/JD2112/TwistMethylFlow",
5+
"data": {
6+
"name": "TwistMethylFlow",
7+
"url": "https://github.com/JD2112/TwistMethylFlow",
8+
"full_name": "JD2112/TwistMethylFlow",
9+
"html_url": "https://github.com/JD2112/TwistMethylFlow",
10+
"private": false,
11+
"description": "A NextFlow pipeline for Twist NGS DNA Methylation data analysis",
12+
"created_at": "2024-11-20T08:04:04Z",
13+
"updated_at": "2025-08-26T07:08:54Z",
14+
"clone_url": "https://github.com/JD2112/TwistMethylFlow.git",
15+
"homepage": "https://jd2112.github.io/TwistMethylFlow",
16+
"size": 32712,
17+
"stargazers_count": 1,
18+
"watchers_count": 1,
19+
"language": "Nextflow",
20+
"open_issues_count": 0,
21+
"license": {
22+
"key": "gpl-3.0",
23+
"name": "GNU General Public License v3.0",
24+
"spdx_id": "GPL-3.0",
25+
"url": "https://api.github.com/licenses/gpl-3.0",
26+
"node_id": "MDc6TGljZW5zZTk="
27+
},
28+
"subscribers_count": 1,
29+
"owner": {
30+
"html_url": "https://github.com/JD2112",
31+
"avatar_url": "https://avatars.githubusercontent.com/u/15922543?v=4",
32+
"login": "JD2112",
33+
"type": "User"
34+
},
35+
"topics": [
36+
"dna",
37+
"dna-methylation",
38+
"docker",
39+
"nextflow",
40+
"singularity",
41+
"twist"
42+
],
43+
"timestamp": "2025-09-28 00:57:52.508201",
44+
"avatar": "https://avatars.githubusercontent.com/u/15922543?v=4"
45+
}
46+
}

0 commit comments

Comments
 (0)