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Update monitor_health.yml
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‎.github/workflows/monitor_health.yml‎

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@@ -19,86 +19,88 @@ jobs:
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steps:
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- uses: actions/checkout@v4
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- uses: DeterminateSystems/nix-installer-action@main
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- uses: DeterminateSystems/magic-nix-cache-action@main
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- uses: cachix/cachix-action@v15
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with:
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name: rstats-on-nix
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- name: Check tree health
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run: nix-build --max-jobs 1 --cores 2 health.nix
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#- name: Test tidyverse
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"tidyverse\", glimpse(mtcars))'"
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- name: Test tidyverse
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"tidyverse\", glimpse(mtcars))'"
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#- name: Test arrow
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"arrow\", { write_feather(mtcars, \"mtcars.feather\"); read_feather(\"mtcars.feather\") })'"
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- name: Test arrow
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"arrow\", { write_feather(mtcars, \"mtcars.feather\"); read_feather(\"mtcars.feather\") })'"
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#- name: Test duckdb
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"duckdb\", { con <- dbConnect(duckdb()); dbWriteTable(con, \"mtcars\", mtcars); dbDisconnect(con) })'"
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- name: Test duckdb
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"duckdb\", { con <- dbConnect(duckdb()); dbWriteTable(con, \"mtcars\", mtcars); dbDisconnect(con) })'"
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#- name: Test collapse
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"collapse\", fmean(mtcars$mpg))'"
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- name: Test collapse
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"collapse\", fmean(mtcars$mpg))'"
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#- name: Test kit
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"kit\", countNA(mtcars))'"
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- name: Test kit
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"kit\", countNA(mtcars))'"
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#- name: Test icosa
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"icosa\", { grid <- trigrid(5); print(grid) })'"
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- name: Test icosa
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"icosa\", { grid <- trigrid(5); print(grid) })'"
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46-
#- name: Test sf
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"sf\", { nc <- st_read(system.file(\"shape/nc.shp\", package=\"sf\")); st_bbox(nc) })'"
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- name: Test sf
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"sf\", { nc <- st_read(system.file(\"shape/nc.shp\", package=\"sf\")); st_bbox(nc) })'"
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#- name: Test terra
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"terra\", { r <- rast(system.file(\"ex/logo.tif\", package=\"terra\")); summary(r) })'"
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- name: Test terra
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"terra\", { r <- rast(system.file(\"ex/logo.tif\", package=\"terra\")); summary(r) })'"
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52-
#- name: Test stars
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"stars\", { s <- read_stars(system.file(\"tif/L7_ETMs.tif\", package=\"stars\")); print(s) })'"
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- name: Test stars
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"stars\", { s <- read_stars(system.file(\"tif/L7_ETMs.tif\", package=\"stars\")); print(s) })'"
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55-
##- name: Test Rcpp
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## run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"Rcpp\", { cppFunction(\"int add(int x, int y) { return x + y; }\"); add(1, 2) })'"
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- name: Test Rcpp
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"Rcpp\", { cppFunction(\"int add(int x, int y) { return x + y; }\"); add(1, 2) })'"
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#- name: Test data.table
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"data.table\", { dt <- as.data.table(mtcars); dt[, .(mean_mpg = mean(mpg))] })'"
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- name: Test data.table
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"data.table\", { dt <- as.data.table(mtcars); dt[, .(mean_mpg = mean(mpg))] })'"
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#- name: Test stringi
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"stringi\", stri_length(\"test\"))'"
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- name: Test stringi
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"stringi\", stri_length(\"test\"))'"
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#- name: Test jsonlite
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"jsonlite\", toJSON(mtcars))'"
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- name: Test jsonlite
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"jsonlite\", toJSON(mtcars))'"
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67-
#- name: Test devtools
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"devtools\", dev_sitrep())'"
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- name: Test devtools
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"devtools\", dev_sitrep())'"
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#- name: Test curl
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"curl\", { h <- curl::new_handle(); curl::handle_setopt(h, url = \"https://httpbin.org/get\"); curl::curl_fetch_memory(\"https://httpbin.org/get\", h) })'"
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- name: Test curl
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"curl\", { h <- curl::new_handle(); curl::handle_setopt(h, url = \"https://httpbin.org/get\"); curl::curl_fetch_memory(\"https://httpbin.org/get\", h) })'"
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#- name: Test openssl
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"openssl\", sha256(\"test\"))'"
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- name: Test openssl
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"openssl\", sha256(\"test\"))'"
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#- name: Test ragg
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"ragg\", { agg_png(\"test_plot.png\"); plot(1:10); dev.off() })'"
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- name: Test ragg
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"ragg\", { agg_png(\"test_plot.png\"); plot(1:10); dev.off() })'"
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#- name: Test shiny
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"shiny\", cat(\"Shiny package loaded. Run `runExample()` to see examples.\\n\"))'"
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- name: Test shiny
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"shiny\", cat(\"Shiny package loaded. Run `runExample()` to see examples.\\n\"))'"
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82-
#- name: Test dbplyr
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"dbplyr\", tbl_lazy(mtcars))'"
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- name: Test dbplyr
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"dbplyr\", tbl_lazy(mtcars))'"
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85-
#- name: Test RcppEigen
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"RcppEigen\", { fastLm( log(Volume) ~ log(Girth), data=trees) })'"
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- name: Test RcppEigen
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"RcppEigen\", { fastLm( log(Volume) ~ log(Girth), data=trees) })'"
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#- name: Test nloptr
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"nloptr\", { res <- nloptr(x0 = 1, eval_f = function(x) x^3, eval_grad_f = function(x) 2*x^2, lb = -5, ub = 5, opts = list(\"algorithm\"=\"NLOPT_LD_LBFGS\", \"maxeval\"=10)); res$solution })'"
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- name: Test nloptr
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"nloptr\", { res <- nloptr(x0 = 1, eval_f = function(x) x^3, eval_grad_f = function(x) 2*x^2, lb = -5, ub = 5, opts = list(\"algorithm\"=\"NLOPT_LD_LBFGS\", \"maxeval\"=10)); res$solution })'"
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#- name: Test igraph
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"igraph\", { g <- make_ring(10); plot(g) })'"
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- name: Test igraph
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"igraph\", { g <- make_ring(10); plot(g) })'"
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#- name: Test rJava
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"rJava\", .jinit())'"
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- name: Test rJava
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"rJava\", .jinit())'"
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#- name: Test RCurl
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"RCurl\", getURL(\"https://httpbin.org/get\"))'"
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- name: Test RCurl
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"RCurl\", getURL(\"https://httpbin.org/get\"))'"
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#- name: Test RSQLite
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"RSQLite\", { con <- dbConnect(RSQLite::SQLite(), \":memory:\"); dbWriteTable(con, \"mtcars\", mtcars); dbDisconnect(con) })'"
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- name: Test RSQLite
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"RSQLite\", { con <- dbConnect(RSQLite::SQLite(), \":memory:\"); dbWriteTable(con, \"mtcars\", mtcars); dbDisconnect(con) })'"
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#- name: Test rstan
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# run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"rstan\", cat(\"rstan package loaded.\\n\"))'"
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- name: Test rstan
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run: nix-shell health.nix --run "Rscript -e 'withr::with_package(\"rstan\", cat(\"rstan package loaded.\\n\"))'"

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