Update Copernicus Publications template to version 5.3 (#228)

Author: nuest

NEWS.md

@@ -3,6 +3,7 @@ rticles 0.9
 
 - Added support for Keywords in IEEE Trans template (@espinielli, #227).
 
+- Update Copernicus Publications template to version 5.3 (@nuest, #228).
 
 rticles 0.8
 ---------------------------------------------------------------------

R/copernicus_article.R

@@ -12,7 +12,7 @@
 #'
 #' An number of required and optional manuscript sections, e.g. \code{acknowledgements}, \code{competinginterests}, or \code{authorcontribution}, must be declared using the respective properties of the R Markdown header - see skeleton file.
 #'
-#' \strong{Version:} Based on copernicus_package.zip in the version 5.0, 21 March 2018, using \code{copernicus.cls} in version 8.67, 30 January 2018
+#' \strong{Version:} Based on copernicus_package.zip in the version 5.3, 18 February 2019, using \code{copernicus.cls} in version 8.82.
 #'
 #' \strong{Copernicus journal abbreviations:} You can use the function \code{copernicus_journal_abbreviations()} to get the journal abbreviation for all journals supported by the copernicus article template.
 #'
@@ -74,12 +74,14 @@ copernicus_journals <- list(
   "Atmospheric Measurement Techniques" = "amt",
   "Biogeosciences" = "bg",
   "Climate of the Past" = "cp",
+  "DEUQUA Special Publications" = "deuquasp",
   "Drinking Water Engineering and Science" = "dwes",
   "Earth Surface Dynamics" = "esurf",
   "Earth System Dynamics" = "esd",
   "Earth System Science Data" = "essd",
   "E&G Quaternary Science Journal" = "egqsj",
   "Fossil Record" = "fr",
+  "Geochronology" = "gchron",
   "Geographica Helvetica" = "gh",
   "Geoscience Communication" = "gc",
   "Geoscientific Instrumentation, Methods and Data Systems" = "gi",

…ources/README_copernicus_package_5_0.txt …ources/README_copernicus_package_5_3.txtinst/rmarkdown/templates/copernicus_article/resources/README_copernicus_package_5_0.txt renamed to inst/rmarkdown/templates/copernicus_article/resources/README_copernicus_package_5_3.txt inst/rmarkdown/templates/copernicus_article/resources/README_copernicus_package_5_0.txt renamed to inst/rmarkdown/templates/copernicus_article/resources/README_copernicus_package_5_3.txt

@@ -1,22 +1,22 @@
-File: README_copernicus_package_5_0.txt
+File: README_copernicus_package_5_3.txt
 -------------------------------------------------------------------------
 This is a README file for the Copernicus Publications LaTeX Macro Package 
-copernicus_package.zip in the version 5.0, 21 March 2018
+copernicus_package.zip in the version 5.3, 18 February 2019
 -------------------------------------------------------------------------
 It consists of several files, each with its separate copyright.
 This specific archive is collected for journals published by 
 Copernicus Publications (Copernicus GmbH).
 
-Copyright (C) 2018 Copernicus GmbH
+Copyright (C) 2019 Copernicus GmbH
 
 E-mail: [email protected]
 URL:   	https://publications.copernicus.org
 
 
 
 Content:
-- copernicus.cls: The LaTeX2e class file designed for Copernicus Publications journals. Current Version 8.67, 30 January 2018
-- copernicus.cfg: The configuration file containing journal-specific information used by the class file. Last update 21 March 2018
+- copernicus.cls: The LaTeX2e class file designed for Copernicus Publications journals. Current Version 8.82, 8 October 2018
+- copernicus.cfg: The configuration file containing journal-specific information used by the class file. Last update 18 February 2019
 - copernicus.bst: The bibliographic style file for BibTeX. Current Version 1.2, September 2017 
 - natbib.sty
 - pdfscreencop.sty / pdfscreen.sty

inst/rmarkdown/templates/copernicus_article/resources/template.tex

@@ -27,12 +27,14 @@
 % Atmospheric Measurement Techniques (amt)
 % Biogeosciences (bg)
 % Climate of the Past (cp)
+% DEUQUA Special Publications (deuquasp)
 % Drinking Water Engineering and Science (dwes)
 % Earth Surface Dynamics (esurf)
 % Earth System Dynamics (esd)
 % Earth System Science Data (essd)
 % E&G Quaternary Science Journal (egqsj)
 % Fossil Record (fr)
+% Geochronology (gchron)
 % Geographica Helvetica (gh)
 % Geoscience Communication (gc)
 % Geoscientific Instrumentation, Methods and Data Systems (gi)
@@ -158,6 +160,13 @@
 \codedataavailability{$availability.codedata$} %% use this section when having data sets and software code available
 $endif$
 
+$if(availability.sample)$
+\sampleavailability{$availability.sample$} %% use this section when having geoscientific samples available
+$endif$
+
+$if(videosupplement)$
+\videosupplement{$videosupplement$} %% use this section when having geoscientific samples available
+$endif$
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %% optional

inst/rmarkdown/templates/copernicus_article/skeleton/copernicus.cfg

@@ -1,8 +1,11 @@
 \newif\ifprp             \DeclareOption{prp}     {\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue                  \@bartrue \prptrue}
 \newif\ifgtes            \DeclareOption{gtes}    {\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue                  \@bartrue \gtestrue}
 \newif\ifcopyediting     \DeclareOption{copyediting}{\copyeditingtrue\@noreftrue}
-\newif\ifgc  \DeclareOption{gc}{\@sansseriffacetrue\@sansserifheadertrue\@twostagejnltrue\gctrue}
-            \DeclareOption{gcd}{\@sansseriffacetrue\@sansserifheadertrue\@stage@finalfalse\gctrue}
+\newif\ifgchron  \DeclareOption{gchron}{\@sansseriffacetrue\@sansserifheadertrue\@twostagejnltrue\gchrontrue}
+            \DeclareOption{gchrond}{\@sansseriffacetrue\@sansserifheadertrue\@stage@finalfalse\gchrontrue}
+\newif\ifdeuquasp  \DeclareOption{deuquasp}{\@sansseriffacetrue\@sansserifheadertrue\@abstractindentedtrue\@bartrue\@seclinetrue\deuquasptrue}
+\newif\ifgc  \DeclareOption{gc}{\@sansseriffacetrue\@sansserifheadertrue\@bartrue\@twostagejnltrue\gctrue}
+            \DeclareOption{gcd}{\@sansseriffacetrue\@sansserifheadertrue\@bartrue\@stage@finalfalse\gctrue}
 \newif\ifegqsj  \DeclareOption{egqsj}{\@sansseriffacetrue\@sansserifheadertrue\@abstractindentedtrue\@bartrue\@seclinetrue\egqsjtrue}
 \newif\ifjm  \DeclareOption{jm}{\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue\jmtrue}
 \newif\ifwes  \DeclareOption{wes}{\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue\@bartrue\@twostagejnltrue\westrue}
@@ -14,7 +17,8 @@
 \newif\ifap  \DeclareOption{ap}{\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue\@bartrue\aptrue}
 \newif\ifsoil  \DeclareOption{soil}{\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue\@bartrue\@twostagejnltrue\soiltrue}
             \DeclareOption{soild}{\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue\@bartrue\@stage@finalfalse\soiltrue}
-\newif\ifangeocom  \DeclareOption{angeocom}{\@bartrue\angeocomtrue}
+\newif\ifangeocom  \DeclareOption{angeocom}{\@bartrue\@twostagejnltrue\angeocomtrue}
+            \DeclareOption{angeocomd}{\@bartrue\@stage@finalfalse\angeocomtrue}
 \newif\ifwe  \DeclareOption{we}{\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue\@bartrue\wetrue}
 \newif\ifsdpd  \DeclareOption{sdpd}{\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue\@bartrue\sdpdtrue}
 \newif\ifsdwr  \DeclareOption{sdwr}{\@sansseriffacetrue\@sansserifheadertrue\@abstractcenteredtrue\@bartrue\sdwrtrue}
@@ -55,7 +59,8 @@
             \DeclareOption{cpd}{\@sansseriffacetrue\@sansserifheadertrue\@stage@finalfalse\cptrue}
 \newif\ifastra  \DeclareOption{astra}{\astratrue}
 \newif\ifars  \DeclareOption{ars}{\arstrue}
-\newif\ifangeo  \DeclareOption{angeo}{\angeotrue}
+\newif\ifangeo  \DeclareOption{angeo}{\@twostagejnltrue\angeotrue}
+            \DeclareOption{angeod}{\@stage@finalfalse\angeotrue}
 \newif\ifamt  \DeclareOption{amt}{\@twostagejnltrue\amttrue}
             \DeclareOption{amtd}{\@stage@finalfalse\amttrue}
 \newif\ifadgeo  \DeclareOption{adgeo}{\adgeotrue}
@@ -186,10 +191,22 @@
   \def\@journalnameshortlower{angeo}
   \def\@journalstartyear{1983}
   \def\@sentence{Published by Copernicus Publications on behalf of the European Geosciences Union.}
-  \def\@journalurl{www.ann-geophys.net}
-  \def\@journallogo{\includegraphics{ANGEO_Logo.pdf}}
-  \definecolor{bgcol}{rgb}{1,1,1}
-  \definecolor{rulecol}{rgb}{1.0,1.0,1.0}
+  \if@stage@final
+    \def\@journalurl{www.ann-geophys.net}
+    \def\@journallogo{\includegraphics{ANGEO_Logo.pdf}}
+    \definecolor{bgcol}{rgb}{1,1,1}
+    \definecolor{rulecol}{rgb}{1.0,1.0,1.0}
+  \else
+    \def\@journalurl{}
+    \def\@journallogo{}
+    \def\@sentenceDiscussion{}
+    \if@cop@home
+      \definecolor{journalname}{rgb}{1.0,1.0,1.0}
+      \definecolor{buttonbackground}{rgb}{1.0,1.0,1.0}
+      \definecolor{paneltext}{rgb}{1.0,1.0,1.0}
+      \definecolor{buttontext}{rgb}{1.0,1.0,1.0}
+    \fi
+  \fi
 \fi
 \ifars%classical
   \def\@journalname{Advances in Radio Sciences}
@@ -708,11 +725,23 @@
   \def\@journalnameshortlower{angeo}
   \def\@journalstartyear{1983}
   \def\@sentence{Published by Copernicus Publications on behalf of the European Geosciences Union.}
-  \def\@journalurl{www.ann-geophys.net}
-  \def\@journallogo{\includegraphics{ANGEO_Logo.pdf}}
-  \definecolor{bgcol}{rgb}{1,1,1}
-  \definecolor{barcol}{rgb}{0.851,0.851,0.851}
-  \definecolor{rulecol}{rgb}{0.0,0.0,0.0}
+  \if@stage@final
+    \def\@journalurl{www.ann-geophys.net}
+    \def\@journallogo{\includegraphics{ANGEO_Logo.pdf}}
+    \definecolor{bgcol}{rgb}{1,1,1}
+    \definecolor{barcol}{rgb}{0.851,0.851,0.851}
+    \definecolor{rulecol}{rgb}{0.0,0.0,0.0}
+  \else
+    \def\@journalurl{}
+    \def\@journallogo{}
+    \def\@sentenceDiscussion{}
+    \if@cop@home
+      \definecolor{journalname}{rgb}{1.0,1.0,1.0}
+      \definecolor{buttonbackground}{rgb}{1.0,1.0,1.0}
+      \definecolor{paneltext}{rgb}{1.0,1.0,1.0}
+      \definecolor{buttontext}{rgb}{1.0,1.0,1.0}
+    \fi
+  \fi
 \fi
 \ifsoil%classical
   \def\@journalname{SOIL}
@@ -872,7 +901,7 @@
     \def\@journallogo{\includegraphics{GC_Logo.pdf}}
     \definecolor{textcol}{rgb}{0.067,0.494,1.0}
     \definecolor{bgcol}{rgb}{1,1,1}
-    \definecolor{rulecol}{rgb}{1.0,1.0,1.0}
+    \definecolor{rulecol}{rgb}{0.067,0.494,1.0}
   \else
     \def\@journalurl{www.geosci-commun-discuss.net}
     \def\@journallogo{\includegraphics{GCD_Logo.pdf}}
@@ -885,5 +914,43 @@
     \fi
   \fi
 \fi
+\ifdeuquasp%classical
+  \def\@journalname{DEUQUA Special Publications}
+  \def\@journalnameabbreviation{DEUQUA Spec. Pub.}
+  \def\@journalnameshort{DEUQUASP}
+  \def\@journalnameshortlower{deuquasp}
+  \def\@journalstartyear{2018}
+  \def\@sentence{Published by Copernicus Publications on behalf of the Deutsche Quart\"arvereinigung (DEUQUA) e.V.}
+  \def\@journalurl{www.deuqua-spec-pub.net}
+  \def\@journallogo{\includegraphics{DEUQUASP_Logo.pdf}}
+  \definecolor{textcol}{rgb}{0.529,0.533,0.541}
+  \definecolor{bgcol}{rgb}{1,1,1}
+  \definecolor{rulecol}{rgb}{1.0,1.0,1.0}
+\fi
+\ifgchron%classical
+  \def\@journalname{Geochronology}
+  \def\@journalnameabbreviation{Geochronology}
+  \def\@journalnameshort{GCHRON}
+  \def\@journalnameshortlower{gchron}
+  \def\@journalstartyear{2019}
+  \def\@sentence{Published by Copernicus Publications on behalf of the European Geosciences Union.}
+  \if@stage@final
+    \def\@journalurl{www.geochronology.net}
+    \def\@journallogo{\includegraphics{GCHRON_Logo.pdf}}
+    \definecolor{textcol}{rgb}{0.447,0.247,0.329}
+    \definecolor{bgcol}{rgb}{1,1,1}
+    \definecolor{rulecol}{rgb}{1.0,1.0,1.0}
+  \else
+    \def\@journalurl{www.geochronology-discuss.net}
+    \def\@journallogo{\includegraphics{GCHROND_Logo.pdf}}
+    \def\@sentenceDiscussion{This discussion paper is/has been under review for the journal Geochronology (GChron).\\ Please refer to the corresponding final paper in GChron if available.}
+    \if@cop@home
+      \definecolor{journalname}{rgb}{1.0,1.0,1.0}
+      \definecolor{buttonbackground}{rgb}{1.0,1.0,1.0}
+      \definecolor{paneltext}{rgb}{1.0,1.0,1.0}
+      \definecolor{buttontext}{rgb}{1.0,1.0,1.0}
+    \fi
+  \fi
+\fi
 
 }