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Merged
merged 2 commits into from
May 26, 2025
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first commit, fix loading raw files for apply_ica #5

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first commit, fix loading raw files for apply_ica
jshanna100 May 22, 2025
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jshanna100 May 26, 2025
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22 changes: 16 additions & 6 deletions mne_bids_pipeline/steps/preprocessing/_08a_apply_ica.py
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Original file line number Diff line number Diff line change
Expand Up @@ -92,15 +92,25 @@ def get_input_fnames_apply_ica_raw(
run: str,
task: str | None,
) -> InFilesT:
in_files = _get_run_rest_noise_path(
cfg=cfg,
bids_basename = BIDSPath(
subject=subject,
session=session,
run=run,
task=task,
kind="filt",
mf_reference_run=cfg.mf_reference_run,
task=cfg.task,
acquisition=cfg.acq,
recording=cfg.rec,
space=cfg.space,
datatype=cfg.datatype,
root=cfg.deriv_root,
check=False,
extension=".fif",
)
in_files = dict()
for run in cfg.runs:
key = f"raw_run-{run}"
in_files[key] = bids_basename.copy().update(
run=run, processing=cfg.processing, suffix="raw"
)
_update_for_splits(in_files, key, single=True)
assert len(in_files)
in_files.update(_ica_paths(cfg=cfg, subject=subject, session=session))
return in_files
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