I have a zarr folder with too many files. 136000 64x64x64x1x1 chunks. In order to fix this issue I changed the chunk size to 64x64x64x1x1000. Which makes the resulting folder much easier to deal with.
The problem is that I am creating the zarr folder from images stored in TIFF files with N frames each, where N < 1000. I create the zarr file, write the first set of images. Then re-open the zarr file and write the next set of images.
After I am done some of the images are all 0's.
Maybe I am doing something wrong, by opening and closing the writer, I can make a test case, but probably not before August.
In the meantime I am using the zarr file with an excess of files that I generated from the tiff files, so it shouldn't have incomplete chunks to update.
I have a zarr folder with too many files. 136000 64x64x64x1x1 chunks. In order to fix this issue I changed the chunk size to 64x64x64x1x1000. Which makes the resulting folder much easier to deal with.
The problem is that I am creating the zarr folder from images stored in TIFF files with N frames each, where N < 1000. I create the zarr file, write the first set of images. Then re-open the zarr file and write the next set of images.
After I am done some of the images are all 0's.
Maybe I am doing something wrong, by opening and closing the writer, I can make a test case, but probably not before August.
In the meantime I am using the zarr file with an excess of files that I generated from the tiff files, so it shouldn't have incomplete chunks to update.