chore: single LICENSE.md file, disable and remove license file headers

bogovicj · bogovicj · commit 1192cfee756e · 2026-05-19T13:17:51.000-04:00
diff --git a/LICENSE.md b/LICENSE.md
diff --git a/pom.xml b/pom.xml
@@ -124,7 +124,11 @@
 		<license.projectName>N5 Viewer</license.projectName>
 		<license.organizationName>Saalfeld Lab</license.organizationName>
 		<license.copyrightOwners>Igor Pisarev, Stephan Saalfeld</license.copyrightOwners>
-		<license.excludes>**/resources/**</license.excludes>
+		<!-- managed by `copy-resources` plugin  -->
+		<license.skipUpdateLicense>true</license.skipUpdateLicense>
+		<license.skipUpdateProjectLicense>true</license.skipUpdateProjectLicense>
+
+		<scijava.jvm.version>8</scijava.jvm.version>
 
 		<!-- NB: Deploy releases to the SciJava Maven repository. -->
 		<releaseProfiles>sign,deploy-to-scijava</releaseProfiles>
@@ -134,16 +138,17 @@
 		<bigdataviewer-core.version>10.6.1</bigdataviewer-core.version>
 		<bigdataviewer-vistools.version>1.0.0-beta-36</bigdataviewer-vistools.version>
 
-		<n5.version>4.0.0-alpha-12</n5.version>
-		<n5-aws-s3.version>4.4.0-alpha-9</n5-aws-s3.version>
-		<n5-blosc.version>2.0.0-alpha-4</n5-blosc.version>
-		<n5-google-cloud.version>5.2.0-alpha-7</n5-google-cloud.version>
-		<n5-hdf5.version>2.3.0-alpha-7</n5-hdf5.version>
-		<n5-ij.version>4.5.0-alpha-7</n5-ij.version>
-		<n5-imglib2.version>7.1.0-alpha-8</n5-imglib2.version>
-		<n5-universe.version>2.4.0-alpha-9</n5-universe.version>
-		<n5-zarr.version>2.0.0-alpha-8</n5-zarr.version>
-		<n5-zstandard.version>2.0.0-alpha-4</n5-zstandard.version>
+		<n5.version>4.0.0</n5.version>
+		<n5-aws-s3.version>5.0.0</n5-aws-s3.version>
+		<n5-blosc.version>2.0.0</n5-blosc.version>
+		<n5-google-cloud.version>6.0.0</n5-google-cloud.version>
+		<n5-hdf5.version>3.0.0</n5-hdf5.version>
+		<n5-ij.version>5.0.0-alpha-8-SNAPSHOT</n5-ij.version>
+		<n5-imglib2.version>8.0.0</n5-imglib2.version>
+		<n5-universe.version>3.0.0</n5-universe.version>
+		<n5-zarr.version>2.0.0</n5-zarr.version>
+		<n5-zstandard.version>2.0.0</n5-zstandard.version>
+
 	</properties>
 
 	<dependencies>
@@ -227,4 +232,63 @@
 			<url>https://maven.scijava.org/content/groups/public</url>
 		</repository>
 	</repositories>
+
+	<build>
+		<pluginManagement>
+			<plugins>
+				<plugin>
+					<groupId>org.codehaus.mojo</groupId>
+					<artifactId>license-maven-plugin</artifactId>
+					<configuration>
+						<excludes>
+							<exclude>**/*.json</exclude>
+							<exclude>**/resources/**</exclude>
+						</excludes>
+					</configuration>
+				</plugin>
+				<plugin>
+					<groupId>org.codehaus.mojo</groupId>
+					<artifactId>build-helper-maven-plugin</artifactId>
+					<executions>
+						<execution>
+							<id>timestamp-property</id>
+							<goals>
+								<goal>timestamp-property</goal>
+							</goals>
+							<phase>validate</phase>
+							<configuration>
+								<name>current.year</name>
+								<pattern>yyyy</pattern>
+							</configuration>
+						</execution>
+					</executions>
+				</plugin>
+				<plugin>
+					<artifactId>maven-resources-plugin</artifactId>
+					<executions>
+						<execution>
+							<id>copy</id>
+							<phase>compile</phase>
+							<goals>
+								<goal>copy-resources</goal>
+							</goals>
+							<configuration>
+								<outputDirectory>${basedir}</outputDirectory>
+								<resources>
+									<resource>
+										<directory>doc</directory>
+										<includes>
+											<include>*.md</include>
+										</includes>
+										<filtering>true</filtering>
+									</resource>
+								</resources>
+							</configuration>
+						</execution>
+					</executions>
+				</plugin>
+			</plugins>
+		</pluginManagement>
+	</build>
+
 </project>
diff --git a/src/main/java/org/janelia/saalfeldlab/control/AdjustableClippingIntControl.java b/src/main/java/org/janelia/saalfeldlab/control/AdjustableClippingIntControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control;
 
 /**
diff --git a/src/main/java/org/janelia/saalfeldlab/control/ButtonControl.java b/src/main/java/org/janelia/saalfeldlab/control/ButtonControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control;
 
 /**
diff --git a/src/main/java/org/janelia/saalfeldlab/control/ClippingIntControl.java b/src/main/java/org/janelia/saalfeldlab/control/ClippingIntControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control;
 
 /**
diff --git a/src/main/java/org/janelia/saalfeldlab/control/Control.java b/src/main/java/org/janelia/saalfeldlab/control/Control.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control;
 
 import java.util.Set;
diff --git a/src/main/java/org/janelia/saalfeldlab/control/IntControl.java b/src/main/java/org/janelia/saalfeldlab/control/IntControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control;
 
 import java.util.Set;
diff --git a/src/main/java/org/janelia/saalfeldlab/control/VPotControl.java b/src/main/java/org/janelia/saalfeldlab/control/VPotControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control;
 
 /**
diff --git a/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUBDVControls.java b/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUBDVControls.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control.mcu;
 
 import java.util.function.IntConsumer;
diff --git a/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUButtonControl.java b/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUButtonControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control.mcu;
 
 import java.util.function.IntConsumer;
diff --git a/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUControl.java b/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control.mcu;
 
 import java.util.HashSet;
diff --git a/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUControlPanel.java b/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUControlPanel.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control.mcu;
 
 import javax.sound.midi.InvalidMidiDataException;
diff --git a/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUFaderControl.java b/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUFaderControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control.mcu;
 
 import java.util.function.IntConsumer;
diff --git a/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUVPotControl.java b/src/main/java/org/janelia/saalfeldlab/control/mcu/MCUVPotControl.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control.mcu;
 
 import java.util.concurrent.Future;
diff --git a/src/main/java/org/janelia/saalfeldlab/control/mcu/XTouchMiniMCUControlPanel.java b/src/main/java/org/janelia/saalfeldlab/control/mcu/XTouchMiniMCUControlPanel.java
@@ -1,6 +1,3 @@
-/**
- *
- */
 package org.janelia.saalfeldlab.control.mcu;
 
 import javax.sound.midi.InvalidMidiDataException;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/bdv/ColorGenerator.java b/src/main/java/org/janelia/saalfeldlab/n5/bdv/ColorGenerator.java
@@ -1,24 +1,3 @@
-/*-
- * #%L
- * N5 Viewer
- * %%
- * Copyright (C) 2017 - 2022 Igor Pisarev, Stephan Saalfeld
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the
- * License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
 package org.janelia.saalfeldlab.n5.bdv;
 
 import java.util.Random;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/bdv/CropController.java b/src/main/java/org/janelia/saalfeldlab/n5/bdv/CropController.java
@@ -1,24 +1,3 @@
-/*-
- * #%L
- * N5 Viewer
- * %%
- * Copyright (C) 2017 - 2022 Igor Pisarev, Stephan Saalfeld
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the
- * License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
 package org.janelia.saalfeldlab.n5.bdv;
 
 import java.awt.Checkbox;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/bdv/MultiscaleDatasets.java b/src/main/java/org/janelia/saalfeldlab/n5/bdv/MultiscaleDatasets.java
@@ -1,24 +1,3 @@
-/*-
- * #%L
- * N5 Viewer
- * %%
- * Copyright (C) 2017 - 2022 Igor Pisarev, Stephan Saalfeld
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the
- * License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
 package org.janelia.saalfeldlab.n5.bdv;
 
 import java.util.Arrays;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/bdv/N5Viewer.java b/src/main/java/org/janelia/saalfeldlab/n5/bdv/N5Viewer.java
@@ -1,24 +1,3 @@
-/*-
- * #%L
- * N5 Viewer
- * %%
- * Copyright (C) 2017 - 2022 Igor Pisarev, Stephan Saalfeld
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the
- * License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
 package org.janelia.saalfeldlab.n5.bdv;
 
 import static bdv.BigDataViewer.createConverterToARGB;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/bdv/N5ViewerTreeCellRenderer.java b/src/main/java/org/janelia/saalfeldlab/n5/bdv/N5ViewerTreeCellRenderer.java
@@ -1,24 +1,3 @@
-/*-
- * #%L
- * N5 Viewer
- * %%
- * Copyright (C) 2017 - 2022 Igor Pisarev, Stephan Saalfeld
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the
- * License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
 package org.janelia.saalfeldlab.n5.bdv;
 
 import java.awt.Component;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataMipmapSource.java b/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataMipmapSource.java
@@ -1,24 +1,3 @@
-/*-
- * #%L
- * N5 Viewer
- * %%
- * Copyright (C) 2017 - 2022 Igor Pisarev, Stephan Saalfeld
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the
- * License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
 package org.janelia.saalfeldlab.n5.metadata;
 
 import org.janelia.saalfeldlab.n5.N5Exception;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataSource.java b/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataSource.java
@@ -1,24 +1,3 @@
-/*-
- * #%L
- * N5 Viewer
- * %%
- * Copyright (C) 2017 - 2022 Igor Pisarev, Stephan Saalfeld
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the
- * License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
 package org.janelia.saalfeldlab.n5.metadata;
 
 import java.util.ArrayList;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataSources.java b/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataSources.java
@@ -1,24 +1,3 @@
-/*-
- * #%L
- * N5 Viewer
- * %%
- * Copyright (C) 2017 - 2022 Igor Pisarev, Stephan Saalfeld
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the
- * License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
 package org.janelia.saalfeldlab.n5.metadata;
 
 import java.util.ArrayList;
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/metadata/N5ViewerDatasetFilter.java b/src/main/java/org/janelia/saalfeldlab/n5/metadata/N5ViewerDatasetFilter.java
diff --git a/src/main/java/org/janelia/saalfeldlab/n5/metadata/N5ViewerMultichannelMetadata.java b/src/main/java/org/janelia/saalfeldlab/n5/metadata/N5ViewerMultichannelMetadata.java
diff --git a/src/test/java/org/janelia/saalfeldlab/n5/bdv/BdvAxisMetadataTest.java b/src/test/java/org/janelia/saalfeldlab/n5/bdv/BdvAxisMetadataTest.java
diff --git a/src/test/java/org/janelia/saalfeldlab/n5/bdv/MultiscaleSortTest.java b/src/test/java/org/janelia/saalfeldlab/n5/bdv/MultiscaleSortTest.java
diff --git a/src/test/java/org/janelia/saalfeldlab/n5/bdv/N5SourceFromMetadataTest.java b/src/test/java/org/janelia/saalfeldlab/n5/bdv/N5SourceFromMetadataTest.java

-Original file line number
+Diff line change
@@ @@ -1,6 +1,3 @@ @@
 -/**
 - *
 - */
 package org.janelia.saalfeldlab.control;
 /**