Skip to content

fix counts column in points layer plus allocation  #117

@lopollar

Description

@lopollar

Check if we can add columns to the points layer (Which I think is possible because of the gene column).

Then, if this column is added, adapt the allocation:
replace
cell_counts = combined_partitions.groupby(["cells", "gene"]).size()

by
if 'counts' in df.columns:
cell_counts=df.groupby(["cells", "gene"]).sum()['counts']
else:
cell_counts = df.groupby(["cells", "gene"]).size()

and that should be it!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions