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Merge pull request #1 from saeyslab/vmedaert-patch-0
amended copy paste error
2 parents 904bc4a + 4559fdc commit 0e4c959

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R/procedure_code.Rmd

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27. Using the weighted ligand-target data frame from Step 16, group target genes and filter out the lowest 40% of the regulatory potentials. In this case, there is only one grouping of target genes (DE genes after LCMV infection), but users can define multiple target gene groups if applicable. In case the resulting chord diagram is still overcrowded, users may adjust the `cutoff` parameter to filter out even more ligand-target links.
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27. Using the weighted ligand-target data frame from Step 16, group target genes and filter out the lowest 75% of the regulatory potentials. In this case, there is only one grouping of target genes (DE genes after LCMV infection), but users can define multiple target gene groups if applicable. In case the resulting chord diagram is still overcrowded, users may adjust the `cutoff` parameter to filter out even more ligand-target links.
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```{r visualizations-X}
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R/procedure_code.md

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27. Using the weighted ligand-target data frame from Step 16, group target genes and filter out the lowest 40% of the regulatory potentials. In this case, there is only one grouping of target genes (DE genes after LCMV infection), but users can define multiple target gene groups if applicable. In case the resulting chord diagram is still overcrowded, users may adjust the `cutoff` parameter to filter out even more ligand-target links.
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27. Using the weighted ligand-target data frame from Step 16, group target genes and filter out the lowest 75% of the regulatory potentials. In this case, there is only one grouping of target genes (DE genes after LCMV infection), but users can define multiple target gene groups if applicable. In case the resulting chord diagram is still overcrowded, users may adjust the `cutoff` parameter to filter out even more ligand-target links.
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``` r

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