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Removing dependence on internals of ggplot2 seems to fix #334 #56

Removing dependence on internals of ggplot2 seems to fix #334

Removing dependence on internals of ggplot2 seems to fix #334 #56

Re-run triggered October 15, 2025 10:55
Status Failure
Total duration 3h 43m 57s
Artifacts 7

check-standard.yaml

on: pull_request
Matrix: check-standard
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50 errors and 47 warnings
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
there is no package called ‘nsga2R’
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
trying to use CRAN without setting a mirror
ubuntu-latest (oldrel-1)
there is no package called ‘DiagrammeRsvg’
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot open the connection to 'https://zenodo.org/record/5840787/files/seurat_obj_subset_integrated_zonation.rds'
ubuntu-latest (oldrel-1)
cannot open the connection to 'https://zenodo.org/record/7074291/files/lr_network_human_21122021.rds'
macos-latest (release)
cannot read from connection
macos-latest (release)
there is no package called ‘nsga2R’
macos-latest (release)
cannot read from connection
macos-latest (release)
trying to use CRAN without setting a mirror
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
there is no package called 'nsga2R'
windows-latest (release)
cannot read from connection
windows-latest (release)
trying to use CRAN without setting a mirror
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
trying to use CRAN without setting a mirror
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
trying to use CRAN without setting a mirror
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (oldrel-1)
Assay RNA changing from Assay to Assay
ubuntu-latest (oldrel-1)
Directory 'inst/doc' does not exist.
ubuntu-latest (oldrel-1)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (oldrel-1)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (oldrel-1)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (oldrel-1)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (oldrel-1)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (oldrel-1)
get_expressed_genes:
ubuntu-latest (oldrel-1)
'::' or ':::' imports not declared from:
ubuntu-latest (oldrel-1)
Found the following significant warnings:
macos-latest (release)
Assay RNA changing from Assay to Assay
macos-latest (release)
Directory 'inst/doc' does not exist.
macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
macos-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
macos-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
macos-latest (release)
get_expressed_genes:
macos-latest (release)
'::' or ':::' imports not declared from:
macos-latest (release)
Found the following significant warnings:
windows-latest (release)
Directory 'inst/doc' does not exist.
windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
windows-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
windows-latest (release)
get_expressed_genes:
windows-latest (release)
'::' or ':::' imports not declared from:
windows-latest (release)
Found the following significant warnings:
ubuntu-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (release)
get_expressed_genes:
ubuntu-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (release)
Found the following significant warnings:
ubuntu-latest (devel)
Directory 'inst/doc' does not exist.
ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (devel)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (devel)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (devel)
get_expressed_genes:
ubuntu-latest (devel)
'::' or ':::' imports not declared from:
ubuntu-latest (devel)
Found the following significant warnings:

Artifacts

Produced during runtime
Name Size Digest
Linux-X64-roldrel-1-4-results Expired
42.6 MB
sha256:0e9c34b142a9d001219c1f5c0ec40812c7801f2f944700677e1acf5ffc4f7474
macOS-ARM64-rrelease-0-results Expired
42.6 MB
sha256:b662e09dabd85a1b4db7959929a24713f9ec45f01fdc8b288d88ddc86abebab8