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solution proposed in #333 #58

solution proposed in #333

solution proposed in #333 #58

Re-run triggered December 5, 2025 13:05
Status Failure
Total duration 1h 40m 38s
Artifacts 20

check-standard.yaml

on: pull_request
Matrix: check-standard
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50 errors and 50 warnings
macos-latest (release)
cannot read from connection
macos-latest (release)
there is no package called ‘nsga2R’
macos-latest (release)
cannot read from connection
macos-latest (release)
trying to use CRAN without setting a mirror
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
there is no package called 'nsga2R'
windows-latest (release)
cannot read from connection
windows-latest (release)
trying to use CRAN without setting a mirror
windows-latest (release)
there is no package called 'DiagrammeRsvg'
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
there is no package called ‘nsga2R’
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
trying to use CRAN without setting a mirror
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
trying to use CRAN without setting a mirror
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
Can't select columns that don't exist.
ubuntu-latest (devel)
trying to use CRAN without setting a mirror
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
macos-latest (release)
Assay RNA changing from Assay to Assay
macos-latest (release)
Directory 'inst/doc' does not exist.
macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
macos-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
macos-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
macos-latest (release)
get_expressed_genes:
macos-latest (release)
'::' or ':::' imports not declared from:
macos-latest (release)
Found the following significant warnings:
windows-latest (release)
Assay RNA changing from Assay to Assay
windows-latest (release)
Directory 'inst/doc' does not exist.
windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
windows-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
windows-latest (release)
get_expressed_genes:
windows-latest (release)
'::' or ':::' imports not declared from:
windows-latest (release)
Found the following significant warnings:
ubuntu-latest (oldrel-1)
Assay RNA changing from Assay to Assay
ubuntu-latest (oldrel-1)
Directory 'inst/doc' does not exist.
ubuntu-latest (oldrel-1)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (oldrel-1)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (oldrel-1)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (oldrel-1)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (oldrel-1)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (oldrel-1)
get_expressed_genes:
ubuntu-latest (oldrel-1)
'::' or ':::' imports not declared from:
ubuntu-latest (oldrel-1)
Found the following significant warnings:
ubuntu-latest (release)
Assay RNA changing from Assay to Assay
ubuntu-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (release)
get_expressed_genes:
ubuntu-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (release)
Found the following significant warnings:
ubuntu-latest (devel)
Assay RNA changing from Assay to Assay
ubuntu-latest (devel)
Directory 'inst/doc' does not exist.
ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (devel)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (devel)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (devel)
get_expressed_genes:
ubuntu-latest (devel)
'::' or ':::' imports not declared from:
ubuntu-latest (devel)
Found the following significant warnings:

Artifacts

Produced during runtime
Name Size Digest
Linux-X64-rdevel-2-results Expired
42.7 MB
sha256:7ac7eafda863c73339bccf7fb797b2652ae2aa26d341f13107a52cf082f635b0
Linux-X64-roldrel-1-4-results Expired
42.7 MB
sha256:9a05205a8c23c4542a5c1c28bee23737e8d3db485a634c87aa36a4b33f213007
Linux-X64-rrelease-3-results Expired
42.7 MB
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Windows-X64-rrelease-1-results Expired
42.7 MB
sha256:f628cdfac4e95733f85df7aeea324e8eebc38ca1e15208e327426811fba4943f
macOS-ARM64-rrelease-0-results Expired
42.7 MB
sha256:601bec44b8bbf300368f653eb3f64b96f52814f7d444b218a2846619c176a561