fix(acyclic): enforce reverse-edge ordering and add small-graph regre… #224
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| name: Build and Deploy Docs | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| - main | |
| tags: | |
| - '*' | |
| workflow_dispatch: | |
| inputs: | |
| target: | |
| description: "What to build/deploy (dev=latest, main=stable, or tag)" | |
| type: choice | |
| required: true | |
| options: | |
| - dev | |
| - main | |
| - tag | |
| tag: | |
| description: "Tag to deploy when target=tag (e.g., v1.0.0-beta.3)" | |
| type: string | |
| required: false | |
| workflow_run: | |
| workflows: ["Publish Python Package"] | |
| types: [completed] | |
| jobs: | |
| build-and-deploy: | |
| runs-on: ubuntu-latest | |
| if: > | |
| github.event_name == 'push' || | |
| github.event_name == 'workflow_dispatch' || | |
| (github.event_name == 'workflow_run' && github.event.workflow_run.conclusion == 'success') | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| fetch-tags: true | |
| ref: >- | |
| ${{ | |
| github.event_name == 'workflow_dispatch' && | |
| (github.event.inputs.target == 'tag' && format('refs/tags/{0}', github.event.inputs.tag) || | |
| format('refs/heads/{0}', github.event.inputs.target)) | |
| || github.event_name == 'workflow_run' && github.event.workflow_run.head_sha | |
| || github.ref | |
| }} | |
| - name: Set up Python & Graphviz | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - uses: ts-graphviz/setup-graphviz@v2 | |
| - name: Cache Poetry & pip | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ~/.cache/pypoetry | |
| ~/.cache/pip | |
| key: ${{ runner.os }}-poetry-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install Dependencies | |
| env: | |
| POETRY_DYNAMIC_VERSIONING_COMMANDS: install,build | |
| run: | | |
| pip install poetry | |
| poetry self add "poetry-dynamic-versioning[plugin]" | |
| poetry install --with dev --extras docs | |
| - name: Debug Git state and version | |
| run: | | |
| echo "=== Git State ===" | |
| echo "Commit: $(git rev-parse HEAD)" | |
| echo "Ref: $GITHUB_REF" | |
| echo "Ref name: $GITHUB_REF_NAME" | |
| echo "Exact tag?: $(git describe --tags --exact-match HEAD 2>/dev/null || echo 'none')" | |
| echo "Latest tag: $(git describe --tags --abbrev=0 2>/dev/null || echo 'none')" | |
| echo "=== Project Version ===" | |
| poetry version | |
| poetry run python -c 'import corneto; print(corneto.__version__)' | |
| - name: Determine version_folder | |
| id: set_version | |
| run: | | |
| case "${GITHUB_REF}" in | |
| refs/heads/dev) | |
| echo "version_folder=latest" >> $GITHUB_OUTPUT | |
| ;; | |
| refs/heads/main) | |
| echo "version_folder=stable" >> $GITHUB_OUTPUT | |
| ;; | |
| refs/tags/*) | |
| v="${GITHUB_REF#refs/tags/}" | |
| echo "version_folder=${v}" >> $GITHUB_OUTPUT | |
| ;; | |
| *) | |
| echo "No docs to deploy for ${GITHUB_REF}" >&2 | |
| exit 0 | |
| ;; | |
| esac | |
| - name: Sync GitHub Releases to Docs | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| sleep 30 | |
| python scripts/sync_releases.py --repo saezlab/corneto --docs-dir docs | |
| - name: Build Docs | |
| env: | |
| SPHINX_VERSION_MATCH: ${{ steps.set_version.outputs.version_folder }} | |
| DOCS_BASE_URL: https://corneto.org | |
| run: poetry run sphinx-build -b html docs docs/_build/html | |
| - name: Deploy “latest” docs | |
| if: ${{ steps.set_version.outputs.version_folder == 'latest' }} | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./docs/_build/html | |
| destination_dir: latest | |
| keep_files: true | |
| - name: Deploy “stable” docs | |
| if: ${{ steps.set_version.outputs.version_folder == 'stable' }} | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./docs/_build/html | |
| destination_dir: stable | |
| keep_files: true | |
| - name: Deploy versioned docs for tag | |
| if: ${{ startsWith(github.ref, 'refs/tags/') }} | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./docs/_build/html | |
| destination_dir: ${{ steps.set_version.outputs.version_folder }} | |
| keep_files: true | |
| - name: Prepare root redirect | |
| run: | | |
| mkdir -p temp_root | |
| touch temp_root/.nojekyll | |
| cp docs/custom-index.html temp_root/index.html | |
| - name: Generate switcher.json | |
| env: | |
| DOCS_BASE_URL: https://corneto.org | |
| run: | | |
| python scripts/generate_switcher.py --output temp_root/switcher.json | |
| - name: Deploy root redirect | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: temp_root | |
| destination_dir: ./ | |
| keep_files: true | |
| - name: Patch switcher URL in published HTML | |
| run: | | |
| git fetch origin gh-pages | |
| git worktree add gh-pages-worktree gh-pages | |
| python scripts/patch_switcher_urls.py \ | |
| --root gh-pages-worktree \ | |
| --new-url https://corneto.org/switcher.json | |
| cd gh-pages-worktree | |
| if [ -n "$(git status --porcelain)" ]; then | |
| git config user.name "github-actions[bot]" | |
| git config user.email "github-actions[bot]@users.noreply.github.com" | |
| git add -A | |
| git commit -m "chore: update switcher json url" | |
| git push origin gh-pages | |
| else | |
| echo "No switcher URL changes detected." | |
| fi |