URLError: <urlopen error [SSL: UNEXPECTED_EOF_WHILE_READING] EOF occurred in violation of protocol (_ssl.c:1017)>

[king2306-s]

SSLEOFError Traceback (most recent call last)
File ~/.conda/envs/decoupler/lib/python3.10/urllib/request.py:1348, in AbstractHTTPHandler.do_open(self, http_class, req, **http_conn_args)
1347 try:
-> 1348 h.request(req.get_method(), req.selector, req.data, headers,
1349 encode_chunked=req.has_header('Transfer-encoding'))
1350 except OSError as err: # timeout error

File ~/.conda/envs/decoupler/lib/python3.10/http/client.py:1283, in HTTPConnection.request(self, method, url, body, headers, encode_chunked)
1282 """Send a complete request to the server."""
-> 1283 self._send_request(method, url, body, headers, encode_chunked)

File ~/.conda/envs/decoupler/lib/python3.10/http/client.py:1329, in HTTPConnection._send_request(self, method, url, body, headers, encode_chunked)
1328 body = _encode(body, 'body')
-> 1329 self.endheaders(body, encode_chunked=encode_chunked)

File ~/.conda/envs/decoupler/lib/python3.10/http/client.py:1278, in HTTPConnection.endheaders(self, message_body, encode_chunked)
1277 raise CannotSendHeader()
-> 1278 self._send_output(message_body, encode_chunked=encode_chunked)

File ~/.conda/envs/decoupler/lib/python3.10/http/client.py:1038, in HTTPConnection._send_output(self, message_body, encode_chunked)
1037 del self._buffer[:]
-> 1038 self.send(msg)
1040 if message_body is not None:
1041
1042 # create a consistent interface to message_body

File ~/.conda/envs/decoupler/lib/python3.10/http/client.py:976, in HTTPConnection.send(self, data)
975 if self.auto_open:
--> 976 self.connect()
977 else:

File ~/.conda/envs/decoupler/lib/python3.10/http/client.py:1455, in HTTPSConnection.connect(self)
1453 server_hostname = self.host
-> 1455 self.sock = self._context.wrap_socket(self.sock,
1456 server_hostname=server_hostname)

File ~/.conda/envs/decoupler/lib/python3.10/ssl.py:513, in SSLContext.wrap_socket(self, sock, server_side, do_handshake_on_connect, suppress_ragged_eofs, server_hostname, session)
507 def wrap_socket(self, sock, server_side=False,
508 do_handshake_on_connect=True,
509 suppress_ragged_eofs=True,
510 server_hostname=None, session=None):
511 # SSLSocket class handles server_hostname encoding before it calls
512 # ctx._wrap_socket()
--> 513 return self.sslsocket_class._create(
514 sock=sock,
515 server_side=server_side,
516 do_handshake_on_connect=do_handshake_on_connect,
517 suppress_ragged_eofs=suppress_ragged_eofs,
518 server_hostname=server_hostname,
519 context=self,
520 session=session
521 )

File ~/.conda/envs/decoupler/lib/python3.10/ssl.py:1104, in SSLSocket._create(cls, sock, server_side, do_handshake_on_connect, suppress_ragged_eofs, server_hostname, context, session)
1103 raise ValueError("do_handshake_on_connect should not be specified for non-blocking sockets")
-> 1104 self.do_handshake()
1105 except (OSError, ValueError):

File ~/.conda/envs/decoupler/lib/python3.10/ssl.py:1375, in SSLSocket.do_handshake(self, block)
1374 self.settimeout(None)
-> 1375 self._sslobj.do_handshake()
1376 finally:

SSLEOFError: [SSL: UNEXPECTED_EOF_WHILE_READING] EOF occurred in violation of protocol (_ssl.c:1017)

During handling of the above exception, another exception occurred:

URLError Traceback (most recent call last)
Cell In[32], line 1
----> 1 progeny = dc.op.progeny(organism="Mus musculus")#human
2 progeny

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/decoupler/op/_progeny.py:68, in progeny(organism, top, thr_padj, license, verbose)
66 assert isinstance(thr_padj, int | float) and 0.0 <= thr_padj <= 1.0, "thr_padj must be numeric and between 0 and 1"
67 # Download
---> 68 p = resource(name="PROGENy", organism=organism, license=license, verbose=verbose)
69 p = p.sort_values("p_value").groupby("pathway").head(top).sort_values(["pathway", "p_value"]).reset_index(drop=True)
70 p = p.rename(columns={"pathway": "source", "genesymbol": "target", "p_value": "padj"})

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/decoupler/op/_resource.py:79, in resource(name, organism, license, verbose)
77 # Validate
78 assert isinstance(name, str), "name must be str"
---> 79 names = set(show_resources()["name"])
80 assert name in names, f"name must be one of these: {names}"
81 assert isinstance(organism, str), "organism must be str"

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/decoupler/op/_resource.py:30, in show_resources()
11 def show_resources() -> pd.DataFrame:
12 """
13 Shows available resources in Omnipath :cite:p:omnipath.
14
(...)
28 dc.op.show_resources()
29 """
---> 30 ann = pd.read_csv("https://omnipathdb.org/queries/annotations", sep="\t")
31 ann = ann.set_index("argument").loc["databases"].str.split(";")["values"]
32 url = "https://omnipathdb.org/resources"

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/pandas/io/parsers/readers.py:1026, in read_csv(filepath_or_buffer, sep, delimiter, header, names, index_col, usecols, dtype, engine, converters, true_values, false_values, skipinitialspace, skiprows, skipfooter, nrows, na_values, keep_default_na, na_filter, verbose, skip_blank_lines, parse_dates, infer_datetime_format, keep_date_col, date_parser, date_format, dayfirst, cache_dates, iterator, chunksize, compression, thousands, decimal, lineterminator, quotechar, quoting, doublequote, escapechar, comment, encoding, encoding_errors, dialect, on_bad_lines, delim_whitespace, low_memory, memory_map, float_precision, storage_options, dtype_backend)
1013 kwds_defaults = _refine_defaults_read(
1014 dialect,
1015 delimiter,
(...)
1022 dtype_backend=dtype_backend,
1023 )
1024 kwds.update(kwds_defaults)
-> 1026 return _read(filepath_or_buffer, kwds)

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/pandas/io/parsers/readers.py:620, in _read(filepath_or_buffer, kwds)
617 _validate_names(kwds.get("names", None))
619 # Create the parser.
--> 620 parser = TextFileReader(filepath_or_buffer, **kwds)
622 if chunksize or iterator:
623 return parser

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/pandas/io/parsers/readers.py:1620, in TextFileReader.init(self, f, engine, **kwds)
1617 self.options["has_index_names"] = kwds["has_index_names"]
1619 self.handles: IOHandles | None = None
-> 1620 self._engine = self._make_engine(f, self.engine)

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/pandas/io/parsers/readers.py:1880, in TextFileReader._make_engine(self, f, engine)
1878 if "b" not in mode:
1879 mode += "b"
-> 1880 self.handles = get_handle(
1881 f,
1882 mode,
1883 encoding=self.options.get("encoding", None),
1884 compression=self.options.get("compression", None),
1885 memory_map=self.options.get("memory_map", False),
1886 is_text=is_text,
1887 errors=self.options.get("encoding_errors", "strict"),
1888 storage_options=self.options.get("storage_options", None),
1889 )
1890 assert self.handles is not None
1891 f = self.handles.handle

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/pandas/io/common.py:728, in get_handle(path_or_buf, mode, encoding, compression, memory_map, is_text, errors, storage_options)
725 codecs.lookup_error(errors)
727 # open URLs
--> 728 ioargs = _get_filepath_or_buffer(
729 path_or_buf,
730 encoding=encoding,
731 compression=compression,
732 mode=mode,
733 storage_options=storage_options,
734 )
736 handle = ioargs.filepath_or_buffer
737 handles: list[BaseBuffer]

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/pandas/io/common.py:384, in _get_filepath_or_buffer(filepath_or_buffer, encoding, compression, mode, storage_options)
382 # assuming storage_options is to be interpreted as headers
383 req_info = urllib.request.Request(filepath_or_buffer, headers=storage_options)
--> 384 with urlopen(req_info) as req:
385 content_encoding = req.headers.get("Content-Encoding", None)
386 if content_encoding == "gzip":
387 # Override compression based on Content-Encoding header

File ~/.conda/envs/decoupler/lib/python3.10/site-packages/pandas/io/common.py:289, in urlopen(*args, **kwargs)
283 """
284 Lazy-import wrapper for stdlib urlopen, as that imports a big chunk of
285 the stdlib.
286 """
287 import urllib.request
--> 289 return urllib.request.urlopen(*args, **kwargs)

File ~/.conda/envs/decoupler/lib/python3.10/urllib/request.py:216, in urlopen(url, data, timeout, cafile, capath, cadefault, context)
214 else:
215 opener = _opener
--> 216 return opener.open(url, data, timeout)

File ~/.conda/envs/decoupler/lib/python3.10/urllib/request.py:519, in OpenerDirector.open(self, fullurl, data, timeout)
516 req = meth(req)
518 sys.audit('urllib.Request', req.full_url, req.data, req.headers, req.get_method())
--> 519 response = self._open(req, data)
521 # post-process response
522 meth_name = protocol+"_response"

File ~/.conda/envs/decoupler/lib/python3.10/urllib/request.py:536, in OpenerDirector._open(self, req, data)
533 return result
535 protocol = req.type
--> 536 result = self._call_chain(self.handle_open, protocol, protocol +
537 '_open', req)
538 if result:
539 return result

File ~/.conda/envs/decoupler/lib/python3.10/urllib/request.py:496, in OpenerDirector._call_chain(self, chain, kind, meth_name, *args)
494 for handler in handlers:
495 func = getattr(handler, meth_name)
--> 496 result = func(*args)
497 if result is not None:
498 return result

File ~/.conda/envs/decoupler/lib/python3.10/urllib/request.py:1391, in HTTPSHandler.https_open(self, req)
1390 def https_open(self, req):
-> 1391 return self.do_open(http.client.HTTPSConnection, req,
1392 context=self._context, check_hostname=self._check_hostname)

File ~/.conda/envs/decoupler/lib/python3.10/urllib/request.py:1351, in AbstractHTTPHandler.do_open(self, http_class, req, **http_conn_args)
1348 h.request(req.get_method(), req.selector, req.data, headers,
1349 encode_chunked=req.has_header('Transfer-encoding'))
1350 except OSError as err: # timeout error
-> 1351 raise URLError(err)
1352 r = h.getresponse()
1353 except:

how to slove it ?