use nice tqdm

Author: Intron7

Diff for: decoupler/method_aucell.py

@@ -8,7 +8,7 @@
 from scipy.sparse import csr_matrix
 
 from numpy.random import default_rng
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 from .pre import extract, rename_net, filt_min_n, return_data
 

Diff for: decoupler/method_gsea.py

@@ -12,7 +12,7 @@
 from .pre import extract, rename_net, filt_min_n, return_data
 from .utils import p_adjust_fdr
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

Diff for: decoupler/method_gsva.py

@@ -13,7 +13,7 @@
 from .pre import extract, rename_net, filt_min_n, return_data
 from .method_gsea import std
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

Diff for: decoupler/method_mdt.py

@@ -9,7 +9,7 @@
 
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 
 def check_if_skranger():

Diff for: decoupler/method_mlm.py

@@ -11,7 +11,7 @@
 
 from scipy import stats
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

Diff for: decoupler/method_ora.py

@@ -15,7 +15,7 @@
 from .pre import extract, rename_net, filt_min_n, return_data
 from .utils import p_adjust_fdr
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

Diff for: decoupler/method_udt.py

@@ -9,8 +9,7 @@
 
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 
-from tqdm import tqdm
-
+from tqdm.auto import tqdm
 
 def check_if_sklearn():
     try:

Diff for: decoupler/method_ulm.py

@@ -11,7 +11,7 @@
 
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 
 def mat_cov(A, b):

Diff for: decoupler/method_viper.py

@@ -12,7 +12,8 @@
 
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
+
 
 import numba as nb
 

Diff for: decoupler/method_wmean.py

@@ -10,7 +10,7 @@
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 from .method_gsea import std
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

Diff for: decoupler/method_wsum.py

@@ -10,7 +10,7 @@
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 from .method_gsea import std
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb